RnoALTA0039727-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000025394 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:RGD Symbol;Acc:1302949]
Coordinates
chr3:45832486-45843890:+
Coord C1 exon
chr3:45832486-45832590
Coord A exon
chr3:45843760-45843762
Coord C2 exon
chr3:45843763-45843890
Length
3 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
GTTTTCTTTCTTTGTTCCAGAAG
3' ss Score
10.3
Exon sequences
Seq C1 exon
GTCCCGTCAGGAAGCCCAAGTATGTGGAAAGCCCCAGGGTACCAGGAGATCCAGTTATGATTCCCTTCAGAGAAGGGTCCAAGCCCGCAGAGCCCATCGAGACTG
Seq A exon
AAG
Seq C2 exon
CAAAGGTGGATAATGAACCGAGCTGCTCTCCAGCAGCACAGGAACTGTTGACAAGACTGGGATTTTTACTGGGAGAGGGGATCCCAAGTGCCACACACATAACCATCGAAGACAAAAATGAAGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025394-29-13,29-12-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAGAGAAGGGTCCAAGCC
R:
TCAACAGTTCCTGTGCTGCTG
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]