RnoEX0088525 @ rn6
Exon Skipping
Gene
ENSRNOG00000025394 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:RGD Symbol;Acc:1302949]
Coordinates
chr3:45800521-45843890:+
Coord C1 exon
chr3:45800521-45800709
Coord A exon
chr3:45832486-45832590
Coord C2 exon
chr3:45843760-45843890
Length
105 bp
Sequences
Splice sites
3' ss Seq
TCAGATCTTTCCCTCTGCAGGTC
3' ss Score
10.9
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GAGGTGACTTTGGCTCAGAGACGCCCACCTTGTCCTCCAGTGGTGACTCTCCTGTGAACAGTTTGTCCACAACAGAGGACACCTACCGTGTGAGCTTGGCCAAAGGGGTCTCCATGTCTCTTCCTTCATCACCTTTGCTGCCTCGACAATCTCACCTGACACAGTCAAGGGCGAACAAAAAGTCTCCAG
Seq A exon
GTCCCGTCAGGAAGCCCAAGTATGTGGAAAGCCCCAGGGTACCAGGAGATCCAGTTATGATTCCCTTCAGAGAAGGGTCCAAGCCCGCAGAGCCCATCGAGACTG
Seq C2 exon
AAGCAAAGGTGGATAATGAACCGAGCTGCTCTCCAGCAGCACAGGAACTGTTGACAAGACTGGGATTTTTACTGGGAGAGGGGATCCCAAGTGCCACACACATAACCATCGAAGACAAAAATGAAGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025394-'24-12,'24-11,29-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.859 A=1.000 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000038983fB14749
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGACTTTGGCTCAGAGACG
R:
GTCAACAGTTCCTGTGCTGCT
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]