GgaEX1057145 @ galGal4
Exon Skipping
Gene
ENSGALG00000012570 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr7:35990053-36001474:+
Coord C1 exon
chr7:35990053-35990256
Coord A exon
chr7:35998510-35998611
Coord C2 exon
chr7:36001353-36001474
Length
102 bp
Sequences
Splice sites
3' ss Seq
TCAGCTATTTTCCTTTACAGGTC
3' ss Score
11.05
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
CAGGGGACTCCTGCCCAGAGAATGCCTTGCAGAGTGTTGCAGCATCTGGCCACGGTGCAGATCTTCCCACTGGCAATCAGCATATCCCGGGGGATGCTTACAGGATGAACTTGGCTAAAGGAGTCTCAATGTCATTGCCATCTTCACCTCTGCTGCCACGCCAGTCTTATTTGATGCAGTCGCGATCAAACAAAAAGTCCCCAG
Seq A exon
GTCCGATCAGGAAGGCCAAGTATGTGGAAAGTCCTAGAGTGCCAGGTGAGGCAATTCTACTGCTGAGAAAACAATCAGGGCAAGAAGAACCCATTCAAAATG
Seq C2 exon
CAAAGCCTGATAAAGACTCAAGCTGTTCTCCTGCAGCACAAGAATTGATGACGAGATTGGGTTTTTTACTAGGAGAAGGGATACCAACATCTGCTCATATAGAAGAAAAAAATGAATCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012570-'2-8,'2-5,6-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.942 A=0.843 C2=0.732
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACTCCTGCCCAGAGAAT
R:
TCTTGTGCTGCAGGAGAACAG
Band lengths:
244-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]