BtaEX0035570 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004177 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:37316368-37376549:-
Coord C1 exon
chr2:37376349-37376549
Coord A exon
chr2:37332412-37332516
Coord C2 exon
chr2:37316368-37316498
Length
105 bp
Sequences
Splice sites
3' ss Seq
CAGATCTTTCCCTGCTACAGGTC
3' ss Score
8.02
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
GAGGTGACTTTGGTCCAGAGACTTCCCCTCCAGTCCTGCCCCCTGGCCATGGCGGTGAGTTTTCTGTGAGCAGCCTTCCAGTGGCAGAGGATGCCTACAGGGTGAGCTTGGCTAAAGGCGTCTCCATGTCTCTGCCTTCATCACCTCTGCTGCCCCGACAGTCTCACTCTGTGCCGTCAAGGTCAACTAAAAAGTCCCCAG
Seq A exon
GTCCTGTCAGGAAGCCCAAGTATGTGGAAAGCCCCAGAGTGCCTGGAGATGCAGTCATAATCCCGTTCCGAGACGTGCCCAAGCCAGCAGAGCCCAGTGAGAATG
Seq C2 exon
AAGCAAAGGCCGATAATGAACCGAGCTGTTCGCCGGCAGCTCAAGAACTGTTGACAAGACTGGGATTTTTACTGGGAGAAGGGATCCCAAGTGCCACACACATAACCATTGAAGAAAAAAATGAAACCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004177-'13-16,'13-12,15-16
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.765 A=0.889 C2=0.591
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTCCAGAGACTTCCCCTC
R:
TCAACAGTTCTTGAGCTGCCG
Band lengths:
246-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development