MmuEX0046249 @ mm9
Exon Skipping
Gene
ENSMUSG00000035168 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:MGI Symbol;Acc:MGI:1914110]
Coordinates
chr2:59562718-59609319:+
Coord C1 exon
chr2:59562718-59562906
Coord A exon
chr2:59596522-59596626
Coord C2 exon
chr2:59609189-59609319
Length
105 bp
Sequences
Splice sites
3' ss Seq
TCAGATCTTTCCCTCTGCAGGTC
3' ss Score
10.9
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GAGGTGACTTTGGCTCAGAGACGCCTGCCTTGTCCTCCAGTGGTGACTCTCCTGTGAACAGTTTGTCCACAACAGAGGACACTTATCGTGTGAGCTTGGCCAAAGGGGTCTCTATGTCTCTTCCTTCATCACCTTTGCTGCCTCGACAATCTCTCCTGACACAGTCAAGATCGAACAAAAAATCTCCAG
Seq A exon
GTCCCGTCAGGAAGCCCAAGTATGTGGAAAGCCCCAGGGTGCCGGGAGATCCAGTTATGATCCCGTTCGGAGAAGGGTCCAAGCCCTCAGAGCCCAGTGCGACTG
Seq C2 exon
AAGCGAAGGCTGATAATGAACCGAGCTGCTCTCCAGCAGCTCAAGAACTGTTGACAAGGCTGGGATTTCTACTGGGAGAGGGGATCCCGAGCGCCACACACATAACCATTGAAGACAAAAATGAAGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035168_MULTIEX1-4/25=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.938 A=1.000 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGACTTTGGCTCAGAGACG
R:
CCCAGCCTTGTCAACAGTTCT
Band lengths:
251-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: