GgaEX1057145 @ galGal3
Exon Skipping
Gene
ENSGALG00000012570 | TANC1
Description
NA
Coordinates
chr7:38126389-38137810:+
Coord C1 exon
chr7:38126389-38126592
Coord A exon
chr7:38134846-38134947
Coord C2 exon
chr7:38137689-38137810
Length
102 bp
Sequences
Splice sites
3' ss Seq
TCAGCTATTTTCCTTTACAGGTC
3' ss Score
11.05
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
CAGGGGACTCCTGCCCAGAGAATGCCTTGCAGAGTGTTGCAGCATCTGGCCACGGTGCAGATCTTCCCACTGGCAATCAGCATATCCCGGGGGATGCTTACAGGATGAACTTGGCTAAAGGAGTCTCAATGTCATTGCCATCTTCACCTCTGCTGCCACGCCAGTCTTATTTGATGCAGTCGCGATCAAACAAAAAGTCCCCAG
Seq A exon
GTCCGATCAGGAAGGCCAAGTATGTGGAAAGTCCTAGAGTGCCAGGTGAGGCAATTCTACTGCTGAGAAAACAATCAGGGCAAGAAGAACCCATTCAAAATG
Seq C2 exon
CAAAGCCTGATAAAGACTCAAGCTGTTCTCCTGCAGCACAAGAATTGATGACGAGATTGGGTTTTTTACTAGGAGAAGGGATACCAACATCTGCTCATATAGAAGAAAAAAATGAATCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012570-'1-5,'1-3,3-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.942 A=0.843 C2=0.732
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACTCCTGCCCAGAGAAT
R:
TCTTGTGCTGCAGGAGAACAG
Band lengths:
244-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]