RnoALTA0042642-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000034089 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:RGD Symbol;Acc:1308806]
Coordinates
chr8:128634658-128639154:+
Coord C1 exon
chr8:128634658-128634850
Coord A exon
chr8:128638816-128639056
Coord C2 exon
chr8:128639057-128639154
Length
241 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTCT
5' ss Score
1.07
3' ss Seq
GCTCCCTCCTCCCTCCTCAGTCC
3' ss Score
9.29
Exon sequences
Seq C1 exon
TGTGGGAGGCACCAGGTGGTCCATCGGCTTGTGAGCGGCTTCCTGGAGCGCACCTTCATGGCCACACCTTCCTGTGCCCTTGTGGCCACAGAGCTGGGCTACCTCTTCATCCTACAGCAACAAGTGAAGGAAGCCTCTCTGTGGTACAAGGAGGCCATGAAGCTGGAGGAGAACAGGCTGGCTGCCTTGGCAG
Seq A exon
TCCCACCCTGGCTGTGCGGGGCGCTGGCTCTGGAGAGGCGCTGGCTCTGCTGCCTGCTGCCTGCTGCCTGCTGCCTGCTGCCTGCTGCCTGCTGCCTGCTGCCTGCTGCCTGCTGCCTGCTGCCTGCTGCCTGCTGCCTGCTGCCTGCTGCCTGCTGCCTGCTGCCTGCTGCCTGCTGCCTGCTGCCTGCCTGCCCGCCTGGCTACCCTGCCGGCCCAGCTTTGTTCTTGTCCATCTATAG
Seq C2 exon
GGAGCATCTGGTGCCAGATCCTACAGGGCCAGCTGGAGGAGGCTGCTCACCAGCTGGAGTTCCTCAAGGAGGTGCAGCTGTCACTTGGGAAGTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034089-12-10,12-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGGAGGCACCAGGTG
R:
GACTTCCCAAGTGACAGCTGC
Band lengths:
287-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]