RnoALTA0042642-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000034089 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:RGD Symbol;Acc:1308806]
Coordinates
chr8:128634658-128639154:+
Coord C1 exon
chr8:128634658-128634850
Coord A exon
NA
Coord C2 exon
chr8:128639057-128639154
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTCT
5' ss Score
1.07
3' ss Seq
TTGTTCTTGTCCATCTATAGGGA
3' ss Score
9.76
Exon sequences
Seq C1 exon
TGTGGGAGGCACCAGGTGGTCCATCGGCTTGTGAGCGGCTTCCTGGAGCGCACCTTCATGGCCACACCTTCCTGTGCCCTTGTGGCCACAGAGCTGGGCTACCTCTTCATCCTACAGCAACAAGTGAAGGAAGCCTCTCTGTGGTACAAGGAGGCCATGAAGCTGGAGGAGAACAGGCTGGCTGCCTTGGCAG
Seq A exon
NA
Seq C2 exon
GGAGCATCTGGTGCCAGATCCTACAGGGCCAGCTGGAGGAGGCTGCTCACCAGCTGGAGTTCCTCAAGGAGGTGCAGCTGTCACTTGGGAAGTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034089-12-10,12-9-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGGAGGCACCAGGTG
R:
GACTTCCCAAGTGACAGCTGC
Band lengths:
287-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]