HsaALTA1043976-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000168026 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr3:39120997-39125133:+
Coord C1 exon
chr3:39120997-39121189
Coord A exon
chr3:39125063-39125086
Coord C2 exon
chr3:39125087-39125133
Length
24 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAT
5' ss Score
7.88
3' ss Seq
TTGTTTTGTCCCATTTACAGGGA
3' ss Score
10.08
Exon sequences
Seq C1 exon
TGTGGGAGTCACCAGGTGATTCTAGGGCTAGTGTGTAGTTTCATCGAGCGCACCTTCATGGCCACCCCCTCGTATGTCCATGTGGCCACAGAACTGGGCTATCTCTTCATCCTGAAGAACCAAGTGAAAGAGGCCTTGCTGTGGTATTCAGAAGCCATGAAACTGGACAAGGATGGCATGGCTGGTTTGACAG
Seq A exon
GGATCATCTTGTGTCATATCTTAG
Seq C2 exon
AAGGCCACCTGGAGGAAGCTGAGTACCGGCTGGAATTCCTGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168026-21-14,21-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(58.0=61.5)
A:
NA
C2:
PF134141=TPR_11=PD(40.6=84.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAGTGAAAGAGGCCTTGC
R:
GAATTCCAGCCGGTACTCAGC
Band lengths:
113-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains