RnoALTA0045545-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000017092 | Zfp169
Description
zinc finger protein 169 [Source:RGD Symbol;Acc:1304631]
Coordinates
chr17:16460450-16468808:+
Coord C1 exon
chr17:16460450-16460539
Coord A exon
chr17:16468705-16468707
Coord C2 exon
chr17:16468708-16468808
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GACCACTGCTTTCTCTCTAGCAG
3' ss Score
7.26
Exon sequences
Seq C1 exon
GAATTGCTTTTCCCAAACCGAAACTCATCACACAGCTGGAACAAGGAACAGAGCCCTGGAGAGATGGATGTCTTCTGGACCTCTGTTCAG
Seq A exon
CAG
Seq C2 exon
AACCCAGGACAGAATTAGAGGCCGGTCTCTCCTGCCCGATATCCTTTGCTAGTCCAGAAGTCCTCAGAGTGTGTGTGCTGAATGGATCTCCCTCTCAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017092-1-5,1-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.113
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF097235=Zn-ribbon_8=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACAGAGCCCTGGAGAGAT
R:
GCAAAGGATATCGGGCAGGAG
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]