RnoALTA0045554-2/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000061612 | Zfp184
Description
zinc finger protein 184 [Source:RGD Symbol;Acc:1304798]
Coordinates
chr17:44639823-44640480:-
Coord C1 exon
chr17:44640354-44640480
Coord A exon
chr17:44639880-44639918
Coord C2 exon
chr17:44639823-44639879
Length
39 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
CCCCCCCTCCCTCTGAGCAGGGC
3' ss Score
8.88
Exon sequences
Seq C1 exon
GAATCAGTGACCTTCAAGGATGTGGTCGTGAACTTCACTCAGGAAGAATGGAAACACTTGGATCCTACACAGAGAGATTTGTTCAGAGATGTGACATTGGAAAATTATACACATCTGGTCTCTATAG
Seq A exon
GGCTCCAGGTTTCCAAACCTGATATGATCTCCCATCTAG
Seq C2 exon
AGCAAGGGACAGAGCCATGGATTGAGGAGTCGTGCATTCCTGTTGGTTCCTTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061612-2-8,2-7,2-5-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCGTGAACTTCACTCAGG
R:
AATCCATGGCTCTGTCCCTTG
Band lengths:
128-167
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]