RnoEX0101085 @ rn6
Exon Skipping
Gene
ENSRNOG00000061612 | Zfp184
Description
zinc finger protein 184 [Source:RGD Symbol;Acc:1304798]
Coordinates
chr17:44629541-44640480:-
Coord C1 exon
chr17:44640354-44640480
Coord A exon
chr17:44639823-44639879
Coord C2 exon
chr17:44629541-44631655
Length
57 bp
Sequences
Splice sites
3' ss Seq
TGATATGATCTCCCATCTAGAGC
3' ss Score
7.16
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GAATCAGTGACCTTCAAGGATGTGGTCGTGAACTTCACTCAGGAAGAATGGAAACACTTGGATCCTACACAGAGAGATTTGTTCAGAGATGTGACATTGGAAAATTATACACATCTGGTCTCTATAG
Seq A exon
AGCAAGGGACAGAGCCATGGATTGAGGAGTCGTGCATTCCTGTTGGTTCCTTGGAAG
Seq C2 exon
ACTGGAAGATAAGACCTGAAAATAGTGTGTCACCCCTAGAACTTGACATTTCTGAAGAACATCTGTCCTCAGAGACAGTAGTAACCAACAGCAAAAGGGATGATGGGAGTTTAGAGAAGCTTCAAGCAAACCAACAGACGCTGCCAAGGGAAGTCAAAATAACTGAGAAAACAATGAGACCCTCTTATGAAAAAGATCTTGGTGTGAGCGCAGGCCTCCTAACACAAACAGATATAGCTGTAGATCAGACTTCCACTAACACAAGAGCCAAGCAGAGTTCACGCCCAGGTCAGAAAGAGAAGCTGTGTAAGTGCAATGAATGTGGGAAAGCTTTCACTTACTGCTCTGCTCTCATTCGACATCAGAGAACGCACACTGGGGAGAAACCCTATAAATGTAATGATTGCAACAAAGCTTTCAGCAGAAATGAAAACCTTATAAACCATCAGAGAATCCATACGGGAGACAAACCATACAAATGTGACCAGTGTGGAAAGGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061612-'2-9,'2-8,3-9
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.198 C2=0.186
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCGTGAACTTCACTCAGG
R:
GGGGTGACACACTATTTTCAGGT
Band lengths:
141-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]