BtaEX6098774 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011498 | ZNF184
Description
Bos taurus zinc finger protein 184 (ZNF184), mRNA. [Source:RefSeq mRNA;Acc:NM_001100372]
Coordinates
chr23:30973288-30980070:+
Coord C1 exon
chr23:30973288-30973414
Coord A exon
chr23:30973977-30974072
Coord C2 exon
chr23:30977703-30980070
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTTTTTATTCCAATGCATAGGAC
3' ss Score
6.4
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GAATCAGTGACCTTCAAGGATGTGATAGTGGACTTTACCCAGGAAGAATGGAAACAGCTGGATCCCGTACAGAGAGGTTTATTCAGGGATGTGACATTGGAGAATTATACACATCTGGTCTCTATAG
Seq A exon
GACTCCAAGTTTCCAAACCTGATGTGATTTCCCAGTTAGAGCAAGGGACAGAGCCGTGGATTGTGGAGCCCAGCATCCCAGTAGGGACCCCTGGAG
Seq C2 exon
ACTGGGTGACAAGACCAGAAAATAGCATAACAGCCTCAGAGCTGGACATTTCTGGAGAAGAGCCGTCTCCAGGGGCAGTAGCAGAAAAGCACAAAAGGGATGATCCTTGGAGCACCAACTTCTTAGAAACTTGTGAATCCAAAGGCAGTCCAGAGAGGCAGCAGGCAAACAAACAGACACTGCCAAGGGAAATAAAAATAACTGAAAAGACCATACCAACTTTGGAGCAAGCACATGTAAATAATGACTTTGAAAAAAGCATCAGTGTGAGTTTAGACCTTTTAACACACAAACAAATATCTCCAAAACAGACCTCTACTAAAACAAATGTCAAACAGAATTTAAACCCAGTTAAAAAAGAGAAGTCTTGTAAGTGCAATGAATGTGGAAAAGCTTTTACTTATTGTTCAGCTCTTATTCGCCATCAGAGAACGCATACTGGAGAAAAACCCTACAAATGTAATGAATGTGAAAAAGCCTTCAGCCGGAGTGAAAACCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011498-'8-9,'8-6,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.545 C2=0.228
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF0009621=zf-C2H2=WD(100=3.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAACAGCTGGATCCCGTA
R:
CTTTTCTGCTACTGCCCCTGG
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]