MmuEX0053065 @ mm10
Exon Skipping
Gene
ENSMUSG00000006720 | Zfp184
Description
zinc finger protein 184 (Kruppel-like) [Source:MGI Symbol;Acc:MGI:1922244]
Coordinates
chr13:21949660-21960603:+
Coord C1 exon
chr13:21949660-21949786
Coord A exon
chr13:21950234-21950329
Coord C2 exon
chr13:21958424-21960603
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCTCCCTCTGAGCAGGGC
3' ss Score
8.62
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GAATCAGTGACCTTCAAGGATGTGGTCGTGAACTTCACTCAGGAAGAATGGAAACACCTGGATCCTATACAGAGAGATTTGTTCAGAGATGTGACACTGGAAAATTATACACATCTGGTCTCTATAG
Seq A exon
GGCTCCAGGTTTCCAAACCTGATATGATTTCCCAACTAGAGCAAGGGACAGAGCCATGGACTGAGGATTCGTGCATTCCTGTCGGTCCCTTGGAAG
Seq C2 exon
ACTGGAAGAAAAGAGCTGGAAATAGTGTGTCATCCCTAGAACTTGACATTTCTGAAGAGCATCTATTCTCAGAGACAGTAGTAACCAACAGCAAAAGGGATGATGGGAGTTTAGAGAAGCTTCAAGCAAACCAACAGATGCTGCCAAGGGAAGTCCAAATAACGGAGAAAACAGCACCCACTTGTGAGAGCAACCTCAGTGTGAGCTCAAGCTTCATAACACAAACGGAAGTAGCTCTCGATCAGCCTTCCACTAAAACAAGAGCCAAGCAGAATTCCCACCCAGTTAAAAAGGAGAAGCTGTGTAAGTGCAACGAATGTGGTAAAGCTTTTACTTACTGTTCTGCTCTCATTCGCCACCAAAGAACGCATACTGGAGAGAAACCCTATAAATGTAATGAATGTAACAAAGCTTTCAGCAGAAGTGAAAACCTTATAAACCATCAGAGAATCCATACGGGAGATAAACCGTACAAATGTGACCAGTGTGGAAAGGGTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006720_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.454 C2=0.139
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCTTCAAGGATGTGGTCG
R:
TGTCAAGTTCTAGGGATGACACAC
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types