RnoALTA0045633-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000017318 | Zfp322a
Description
zinc finger protein 322a [Source:RGD Symbol;Acc:1594230]
Coordinates
chr17:44025267-44026324:+
Coord C1 exon
chr17:44025267-44025498
Coord A exon
chr17:44026240-44026242
Coord C2 exon
chr17:44026243-44026324
Length
3 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGA
5' ss Score
7.4
3' ss Seq
ATTGTTGCTTTTTCCTCTAGCAG
3' ss Score
7.85
Exon sequences
Seq C1 exon
GTTGGCCTTGTAACGCGGGTGGATGGGTTCTCCAGGTTGGTATCCTGCGGTTGGCTTGCTGACCTCTCGGCCTCTTCGTCTCTCGGCCCCACTTTCGTTCCCTAAGAAGAGGTGAGACCGAACGGGCTCCCGGAGTGCACGGCCCCGGAAGGTCCGGCTTGAGGGTCCAGTCACCGGAAGTGCCGCCCCGGGCAGCGGAGTAAGGGAGCAGCGGTCCTCGCGGTTCTTGGCG
Seq A exon
CAG
Seq C2 exon
AGGGAAGAATTAATTATTGTGAGTAGTTCTGGATTAGAGACCTTGTGGATCCGAAAGAATAAGTCTTTGGGTTCTTGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017318-2-2,2-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTAAGGGAGCAGCGGTC
R:
TCTTTCGGATCCACAAGGTCTCT
Band lengths:
94-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]