RnoINT0168037 @ rn6
Intron Retention
Gene
ENSRNOG00000017318 | Zfp322a
Description
zinc finger protein 322a [Source:RGD Symbol;Acc:1594230]
Coordinates
chr17:44025267-44026324:+
Coord C1 exon
chr17:44025267-44025498
Coord A exon
chr17:44025499-44026242
Coord C2 exon
chr17:44026243-44026324
Length
744 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGA
5' ss Score
7.4
3' ss Seq
GTTGCTTTTTCCTCTAGCAGAGG
3' ss Score
5.65
Exon sequences
Seq C1 exon
GTTGGCCTTGTAACGCGGGTGGATGGGTTCTCCAGGTTGGTATCCTGCGGTTGGCTTGCTGACCTCTCGGCCTCTTCGTCTCTCGGCCCCACTTTCGTTCCCTAAGAAGAGGTGAGACCGAACGGGCTCCCGGAGTGCACGGCCCCGGAAGGTCCGGCTTGAGGGTCCAGTCACCGGAAGTGCCGCCCCGGGCAGCGGAGTAAGGGAGCAGCGGTCCTCGCGGTTCTTGGCG
Seq A exon
GTGAGAGGGTCGGGGCCGGGCGCGGCTCCCTTGTTGTCACGGTCAACGAAAAGTTGAGAGGAGAGCCTGTAAGACTGTCCTGGAGGTAGTAATGGAACCAGGCTCGAATGTAGTCTGTAGCCTTCCTGAATGTCTAGAGAACCATGGGCAATGGGAGGACCCTCCCTCAGCCTTAAGGGCGGAGATTAGTTGTGTTGCCCCGGAATCTGCCGACTCTTGTTTGCTCAAAGCATTCCATAGTCATTTATTTTTAGCAATCTTGGTCCTATGTAACTTTGCATTCATGTATCGGATTCCTGCAGTTTTTAGTGAGCAAGGAATGAATCCTTCATCTCAGAAGTTAAAATTATAATGTCTTATCAGTCACCTGAGCGTTTGGAAGGTAGAGGCAAGGGATAGAGAATTCAAAGCCAGCCTAAACTACAGAAGACCCTTCCCCGTCTTTGCAGCAAAAATTAAGGGATACAAAAAGAAGTAGCAGGAGAAAAACAAGGCCTAGGGCTTTGTTCTGAACTTAAAATCTCCCAGCTAGAAGAATTCTTGTTATTTTGTGTAGAGCATGTCAGAAAGAAACTGCTTCTTGAAGGAGAAACGGTATAAGGAAACATTAGAATGAAAAAAATTTGCTGAAGGATGATGTCTGGATTGGAGCGTGCATGGGACATTATTTAAATGACCTGCTGTTAAAAAAAAAAAAGGTAAGCTTGCAGTCATGTTCAGCATTGTTGCTTTTTCCTCTAGCAG
Seq C2 exon
AGGGAAGAATTAATTATTGTGAGTAGTTCTGGATTAGAGACCTTGTGGATCCGAAAGAATAAGTCTTTGGGTTCTTGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017318:ENSRNOT00000023268:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGCCTTGTAACGCGGG
R:
TTAACAAGAACCCAAAGACTTATTCT
Band lengths:
313-1057
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]