BtaINT0092852 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031741 | MGC157324
Description
Bos taurus zinc finger protein 322 (ZNF322A), mRNA. [Source:RefSeq mRNA;Acc:NM_001098155]
Coordinates
chr23:31206277-31207416:+
Coord C1 exon
chr23:31206277-31206403
Coord A exon
chr23:31206404-31207327
Coord C2 exon
chr23:31207328-31207416
Length
924 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
3' ss Seq
ATTTTTGACTTTTTCTCCAGGAG
3' ss Score
9.15
Exon sequences
Seq C1 exon
GGCTGAAAAGGCTCGGGAAGCTAGCTGGCCTTGTTGGCCCTTAAATCGCACACTGGATGGCCTGGCCCCAGCTACCCTCGCCGAGCCGCGCAAAGAAGGATGCTCCTGGCTCTCGTCGGCCTCCCAG
Seq A exon
GTTTGCTTTCCTTCTTTTCCCGAAGGTGGGCCCTTAGGTTCACCCTCCGAAGCCTGCGGCCGCAGGGAAAGCCAAACCCCGAGTGTCCGGAGAGTAACCGGAAGTGCCCTCCCAGGCAGAGGGGCGGCGCCGGCTGCAGCCGGGGTAAGCGCGGCCCGCGGGGCTTGGGAGGGGCATGGCCTGCGAGGCCCAGGGATATGTGGAGGGGTTCGGAGGGACTGGAGACCCCTCGGCCTCTGCCTGATAGGAGCAGCCTCTGTTCCTCTCGACGGTGCAGGATCTGAAACCCCCCCTGAGGGCGGACTGAAAGGTGGTCAATGAAAAGTTGAAAGAAGAGAAGCATAGTACTAAGGTTCCTGGAGATAATAATAGTAAACACTGCCGGGCACTTTTTAAAGCGATCTTTATCTTGCACTCTGGGGAAAAAAAAAACAAGGACGTTGAATGGAGTTCTCCACCCACCACCCATCCCCATCTTTAAGGCAGAGATCGGTTATGTTTCATCTAGTCTGTATGCAGAAGAATCTGGTTTAATCATCCCATAATTATTATTGGAAACCGACATTATATACAACTTTGTCATATGCACTTGTCAACTGCATCTGGAGGTTTATAGTGGTAGAAGAATGGGTCATTGATCTAAGTGAAGATAATACACTTAGCAGAGGCGAAAAATTGAAACAAGCAGAACAGGATTCAGGGCTTTATTATGAAGTTAGTCATTACCCAGAAGGACTCTCAATATTTTGTCTGGAGCTCTCTGGGAGAAAACAATGTGAGGAGAGGTGGGAAGAGGTAAGTTATGATTGAAAGATACTGACCAGACTGGGAAGTAAAGGGAACCGATTTTTAGATGTCCAGCGCCAGAAAAATTTAAAATTTCACAAAAATTTTAAATTTCTACATTTTTGACTTTTTCTCCAG
Seq C2 exon
GAGAGGCAAGAATTGAGTATTGTTAATAACTGTGGACTGGAGACCTTTTGGAGCCAAAAGGAAGACAGTCTTGAGTCTTTCTTGTTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031741:ENSBTAT00000045005:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGAAAAGGCTCGGGAAG
R:
CGTAACAAGAAAGACTCAAGACTGT
Band lengths:
216-1140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]