MmuINT0178983 @ mm10
Intron Retention
Gene
ENSMUSG00000046351 | Zfp322a
Description
zinc finger protein 322A [Source:MGI Symbol;Acc:MGI:2442566]
Coordinates
chr13:23368120-23369201:-
Coord C1 exon
chr13:23368857-23369201
Coord A exon
chr13:23368206-23368856
Coord C2 exon
chr13:23368120-23368205
Length
651 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGTA
5' ss Score
4.45
3' ss Seq
TTGCTGCTTTTTTCCTCTAGGAG
3' ss Score
11.84
Exon sequences
Seq C1 exon
CCTCCCTGTCCTTGCTGGTGAGAGCGGTTTGTCTTGGCCTTGTGGTGTGCGGGGACCGCTTCTCCAGGTTGGTATCCGGCGGTTGGCTTGCCGACCTCTCAGCATCTCGGCCCACTCTCCTTCCCTAGGAGACCGTGGGACCGAATCGGCCATCGCCGAGTGCTCGGCCCCGGAAGCTCCGGCTTGAGGGTCCAGTCACCGGAAGTGCCGCCCTGGGCGGCGGAGTAAGCGTTCAGCGGGTCCTCGAGGTCCTTGGCCGTGAGAGGGGTCCGGGCCAGGCGCGGCGCCCTTCTTGTCGCTGTCAACGAAAAGTTGGGAGGAGAAACCTGTGAGACTGTCCTGGAG
Seq A exon
GTAGTAATGGAGCCAGGCTCGAATGCAGTCTGGAGCCTTCCTGAATGTCTAGACAACCATGGGCACTGGGGGGACCCTCCCCCAGCCTTAAGGGCGGAGATTAGTTGAGTTCCCCGGAATCTGCAGAATCTGTTTGCTCAAAGCATTCCATAGTCATTTATTTTTAGCAGCCTTGGTCCTGTGTAACATTGCATTCATGAATCGTATTCCTACAGGTTTTAGTGCACGAGGAATGAATCCTTGATCTCAGAAGTTGAAATAATAATGCGCCTATCAGTCACCTGAGCGTTTGAGGTAGAGGTAGGAGGATAGGGAATTAAAAGCCAGTTTAAGCTGCCTAGCGATTTTGAAGCTAGCCTAAGCTACGTGAGACTCTCCCCGTCTTAACAGCAAGAAAAACAAGGCCCAGGGCTTTGTTCTGAACTTAAAAATCTCTCAGCTAGAAGAATTCTTGTTATTTTGTGTAGAGCAGGTCAGAAAGAAACGGCTTCTTGAAGGAGGAACGGAAACATTAGAATGAGCAAAATTTTGCTGAAGGATGATGTCAGGATTGGAGAGTGCATGGGACATTATTTAAATGGCCTACTGTTAAAAGGAAAAATGTAAGCTTTGCAGTCATGCTCATTCAACATTGCTGCTTTTTTCCTCTAG
Seq C2 exon
GAGAGGGAAGAATTAAATATTATGAGTACTTCTGGATTAGAGACCTTGTGGATCTGAAAAAAATAAATCGTTGGGTTCTTGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046351:ENSMUST00000145451:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGCTTCTCCAGGTTGGTAT
R:
TCCACAAGGTCTCTAATCCAGAAGT
Band lengths:
343-994
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types