HsaINT1047392 @ hg38
Intron Retention
Gene
ENSG00000181315 | ZNF322
Description
zinc finger protein 322 [Source:HGNC Symbol;Acc:HGNC:23640]
Coordinates
chr6:26658558-26659752:-
Coord C1 exon
chr6:26659441-26659752
Coord A exon
chr6:26658647-26659440
Coord C2 exon
chr6:26658558-26658646
Length
794 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
ATTATTGATTTTTCCTCTAGGAG
3' ss Score
9.06
Exon sequences
Seq C1 exon
GGGGGTGGGGCTGCGCCGGCCTCTTCCCAGCCAGCTTGAAAGGGTTTGCGTAGCCGGCCTTGTGGGCCCTTGAAGCGCTCTGTTAAAGCGCTCTGTGGGCGGCCTGGCCCCAACTCCTCTAGTCTAGGCGCACGAAGGGAGTTGCTCCTAGGTCTTGTCCGTGCCGGGTTCGCTTTTCTTTCCTTCCCGAAGCCTGGCCCTTAGATCTACTATCGCAGAGTCTGCGGCCGCCAGGAAGCCCAGATTCGAGTGTCCGGAGAGTAACCGGAAGTGCTGTCCCCAGGCCTAGGGGCGGCGCCGGCGGCTGCCAGG
Seq A exon
GTAAGCGCGGCCTGCGGGGCCCAGGGGTGGGATGGGTGCGCGGTGGGACCCAAGACCCACGGCCACAGTCGAGTGGGAGCAGCCCCTGTTCCTGGACACTGAGCATGGTCTGGTCTCCGCTGACGGCGGACGGAGGACTGAAAGATGGTCAATGAAAAGTTGAAAGAAGAGAACCTTAGTACGGTAGTTCCTAGAGATAGTAAACACTGCAAGGCACTTTTCAAAGCAATATAATCTTTCATATATATCGAGGAAAAAAAGGACCTTGAATGGATTTTTCGCTTCATCTTCAGTGCAGAAATTAGTTATGTTGCAGTTGAATCTATCTGCAGAAAAATCTGGTTTGTTTAATCTTCCTATAACCATTTCTTTTTGGAAAATGGAATTACAGATAACTTTATATTATATACACTTATCACATGCACTTTGGGGTTTGTAGTGGTAGACGAATGGGTCTTTGATCTTAGGAGTTGAGATAATACAAACAAAAACAATTAGCAGAAGGAGAAAAAACAAACGAAAAACGAGGCTTAGGGCTTTGTTATGAAGTTACAGTTAGTAATAGAAAGATTCTTGACATTTTGTCTAGAGCTGGTCGGAACTGATGGCTACCAGTGGCAGGTACTTCCTGCAGGAGAAACAGTGTAAGCAAAGATGGGAAGAGGTAAGCTATGGTTGAAGGATGCTCACTAGAATGGAGAGGAAATGGGACCAGTTTTCTAGGCCAGCTCTAGAAAAATTATGAATTATAAATTTCACAAGGTCATCGTCTACATTATTGATTTTTCCTCTAG
Seq C2 exon
GAGAGGCAAGAATTGAGTGTTGTGAATAGTTCTGAACTAGAGACCTTTTGAAACCAAAAGGAAGATGGTCTTGAGTCTTTCTTGTTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181315:ENST00000415922:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTTGAAAGGGTTTGCGT
R:
ACTCAAGACCATCTTCCTTTTGGT
Band lengths:
358-1152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains