MmuINT0178983 @ mm9
Intron Retention
Gene
ENSMUSG00000046351 | Zfp322a
Description
zinc finger protein 322A [Source:MGI Symbol;Acc:MGI:2442566]
Coordinates
chr13:23459989-23461071:-
Coord C1 exon
chr13:23461004-23461071
Coord A exon
chr13:23460075-23461003
Coord C2 exon
chr13:23459989-23460074
Length
929 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
TTGCTGCTTTTTTCCTCTAGGAG
3' ss Score
11.84
Exon sequences
Seq C1 exon
GCCTCCCTGTCCTTGCTGGTGAGAGCGGTTTGTCTTGGCCTTGTGGTGTGCGGGGACCGCTTCTCCAG
Seq A exon
GTTGGTATCCGGCGGTTGGCTTGCCGACCTCTCAGCATCTCGGCCCACTCTCCTTCCCTAGGAGACCGTGGGACCGAATCGGCCATCGCCGAGTGCTCGGCCCCGGAAGCTCCGGCTTGAGGGTCCAGTCACCGGAAGTGCCGCCCTGGGCGGCGGAGTAAGCGTTCAGCGGGTCCTCGAGGTCCTTGGCCGTGAGAGGGGTCCGGGCCAGGCGCGGCGCCCTTCTTGTCGCTGTCAACGAAAAGTTGGGAGGAGAAACCTGTGAGACTGTCCTGGAGGTAGTAATGGAGCCAGGCTCGAATGCAGTCTGGAGCCTTCCTGAATGTCTAGACAACCATGGGCACTGGGGGGACCCTCCCCCAGCCTTAAGGGCGGAGATTAGTTGAGTTCCCCGGAATCTGCAGAATCTGTTTGCTCAAAGCATTCCATAGTCATTTATTTTTAGCAGCCTTGGTCCTGTGTAACATTGCATTCATGAATCGTATTCCTACAGGTTTTAGTGCACGAGGAATGAATCCTTGATCTCAGAAGTTGAAATAATAATGCGCCTATCAGTCACCTGAGCGTTTGAGGTAGAGGTAGGAGGATAGGGAATTAAAAGCCAGTTTAAGCTGCCTAGCGATTTTGAAGCTAGCCTAAGCTACGTGAGACTCTCCCCGTCTTAACAGCAAGAAAAACAAGGCCCAGGGCTTTGTTCTGAACTTAAAAATCTCTCAGCTAGAAGAATTCTTGTTATTTTGTGTAGAGCAGGTCAGAAAGAAACGGCTTCTTGAAGGAGGAACGGAAACATTAGAATGAGCAAAATTTTGCTGAAGGATGATGTCAGGATTGGAGAGTGCATGGGACATTATTTAAATGGCCTACTGTTAAAAGGAAAAATGTAAGCTTTGCAGTCATGCTCATTCAACATTGCTGCTTTTTTCCTCTAG
Seq C2 exon
GAGAGGGAAGAATTAAATATTATGAGTACTTCTGGATTAGAGACCTTGTGGATCTGAAAAAAATAAATCGTTGGGTTCTTGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046351-Zfp322a:NM_001111107:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: