HsaINT0186849 @ hg19
Intron Retention
Gene
ENSG00000181315 | ZNF322A
Description
zinc finger protein 322 [Source:HGNC Symbol;Acc:23640]
Coordinates
chr6:26658786-26659963:-
Coord C1 exon
chr6:26659669-26659963
Coord A exon
chr6:26658875-26659668
Coord C2 exon
chr6:26658786-26658874
Length
794 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
ATTATTGATTTTTCCTCTAGGAG
3' ss Score
9.06
Exon sequences
Seq C1 exon
GGCCTCTTCCCAGCCAGCTTGAAAGGGTTTGCGTAGCCGGCCTTGTGGGCCCTTGAAGCGCTCTGTTAAAGCGCTCTGTGGGCGGCCTGGCCCCAACTCCTCTAGTCTAGGCGCACGAAGGGAGTTGCTCCTAGGTCTTGTCCGTGCCGGGTTCGCTTTTCTTTCCTTCCCGAAGCCTGGCCCTTAGATCTACTATCGCAGAGTCTGCGGCCGCCAGGAAGCCCAGATTCGAGTGTCCGGAGAGTAACCGGAAGTGCTGTCCCCAGGCCTAGGGGCGGCGCCGGCGGCTGCCAGG
Seq A exon
GTAAGCGCGGCCTGCGGGGCCCAGGGGTGGGATGGGTGCGCGGTGGGACCCAAGACCCACGGCCACAGTCGAGTGGGAGCAGCCCCTGTTCCTGGACACTGAGCATGGTCTGGTCTCCGCTGACGGCGGACGGAGGACTGAAAGATGGTCAATGAAAAGTTGAAAGAAGAGAACCTTAGTACGGTAGTTCCTAGAGATAGTAAACACTGCAAGGCACTTTTCAAAGCAATATAATCTTTCATATATATCGAGGAAAAAAAGGACCTTGAATGGATTTTTCGCTTCATCTTCAGTGCAGAAATTAGTTATGTTGCAGTTGAATCTATCTGCAGAAAAATCTGGTTTGTTTAATCTTCCTATAACCATTTCTTTTTGGAAAATGGAATTACAGATAACTTTATATTATATACACTTATCACATGCACTTTGGGGTTTGTAGTGGTAGACGAATGGGTCTTTGATCTTAGGAGTTGAGATAATACAAACAAAAACAATTAGCAGAAGGAGAAAAAACAAACGAAAAACGAGGCTTAGGGCTTTGTTATGAAGTTACAGTTAGTAATAGAAAGATTCTTGACATTTTGTCTAGAGCTGGTCGGAACTGATGGCTACCAGTGGCAGGTACTTCCTGCAGGAGAAACAGTGTAAGCAAAGATGGGAAGAGGTAAGCTATGGTTGAAGGATGCTCACTAGAATGGAGAGGAAATGGGACCAGTTTTCTAGGCCAGCTCTAGAAAAATTATGAATTATAAATTTCACAAGGTCATCGTCTACATTATTGATTTTTCCTCTAG
Seq C2 exon
GAGAGGCAAGAATTGAGTGTTGTGAATAGTTCTGAACTAGAGACCTTTTGAAACCAAAAGGAAGATGGTCTTGAGTCTTTCTTGTTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181315-ZNF322A:NM_024639:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTTGAAAGGGTTTGCGT
R:
ACTCAAGACCATCTTCCTTTTGGT
Band lengths:
358-1152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)