MmuEX1002063 @ mm10
Exon Skipping
Gene
ENSMUSG00000087097 | 4930586N03Rik
Description
RIKEN cDNA 4930586N03 gene [Source:MGI Symbol;Acc:MGI:1923137]
Coordinates
chr13:23314179-23385799:+
Coord C1 exon
chr13:23314179-23314315
Coord A exon
chr13:23355789-23355874
Coord C2 exon
chr13:23385643-23385799
Length
86 bp
Sequences
Splice sites
3' ss Seq
CTCCTCTGATTTTCATCTAGGAG
3' ss Score
9.1
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
CAGGCAGTGCTGTCTACATGTTGAGTTTTTGTCCTGAATGGTACTTCCACCATGGAGTCTGTTGTGCTAAGGACTGGGGGCCTACTAAGGTCTGGACTCCTGTTATAGCCCTAGACTTCCATGGGCATTGTCCTCTG
Seq A exon
GAGGATGGAAACCCAAGTATGACTCTCCAACACATGTTTTCGCCACACCCAAATATCCATTTACCCCAGTATGGCTTGTCTGAGAG
Seq C2 exon
ACTCCCTGCCCACCTGTACCAGGACCCTGATTCTCCCACAGGTTGAGGGGCCGACTGAGACCAGTCCCCTGCAACTTGGAACTAAAGGTAAGCTAATCTGTGTTTCCTGGCCAGTCCCTCAAATGTGGTTTCAGAATAAACTATCTTATACCCTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000087097-'1-10,'1-6,4-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCAGTGCTGTCTACATGT
R:
CTGTGGGAGAATCAGGGTCCT
Band lengths:
178-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types