MmuEX0053223 @ mm10
Exon Skipping
Gene
ENSMUSG00000046351 | Zfp322a
Description
zinc finger protein 322A [Source:MGI Symbol;Acc:MGI:2442566]
Coordinates
chr13:23357032-23362875:-
Coord C1 exon
chr13:23362803-23362875
Coord A exon
chr13:23362580-23362654
Coord C2 exon
chr13:23357032-23357713
Length
75 bp
Sequences
Splice sites
3' ss Seq
GGTGATTTTCTTGCATGAAGGTC
3' ss Score
3.66
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AAAGCTGTTTTTTTTAATTTTGATTTTCTCAAGACATAAAGTGAAGGCTGCTTTTCATCTGTCTGCACTATCG
Seq A exon
GTCTGTGCACTGTGTAGGCCTGTTGCCCATGGGAGCCAGAAGAGTGTTGATGCCCTGGAACTGGAGTTACAGAAG
Seq C2 exon
GTTTGGAGGTACCAAGTAAGAAACTAATGTATATGATGCTGGAAACTTTTAAACACAAACTGCAAATGAATGAAAGGCTTAAAAAAGATATATTTTTGAAGTTACCAGAAAAATGACTATGAAAACAGGGATCAAGAAGACTGATGGAAAACCACTTAGGAGAGAACCATAGAAGATGTACACTTCAGAAGAGGAATGTAACCAGAGAACTCAAAAAAGGAAAACATACCATGTATGCCCTCAAAAGGGTGAAAAAGATTTATATTCGTGTACATGAGATTACTCAAATAGATAATCAAACATATCAGTGCCTTGAACGTGAACAAAACTTTTGTGAAAACTTAGCACGAATGTGTGAGAGAACATATACCGAGGAGAAACCTTATAGATGTGATATGTGTGAGAAAACCTTCATCCAAAGTTCAGATCTTATTTCCCACCAGAGGATCCATAATTACGAGAAACCTTATAAGTGTAGCAAATGTGAGAAGAGCTTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046351_MULTIEX1-2/4=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=12.8),PF0013017=C1_1=WD(100=28.3),PF134651=zf-H2C2_2=WD(100=14.4),PF134651=zf-H2C2_2=WD(100=14.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCTTTTCATCTGTCTGC
R:
TCCATCAGTCTTCTTGATCCCTGT
Band lengths:
176-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types