MmuEX1028446 @ mm10
Exon Skipping
Gene
ENSMUSG00000046351 | Zfp322a
Description
zinc finger protein 322A [Source:MGI Symbol;Acc:MGI:2442566]
Coordinates
chr13:23357032-23362654:-
Coord C1 exon
chr13:23362580-23362654
Coord A exon
chr13:23359298-23359427
Coord C2 exon
chr13:23357032-23357713
Length
130 bp
Sequences
Splice sites
3' ss Seq
TAACTAGAATGATCCTGTAGAAA
3' ss Score
2.12
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
Exon sequences
Seq C1 exon
GTCTGTGCACTGTGTAGGCCTGTTGCCCATGGGAGCCAGAAGAGTGTTGATGCCCTGGAACTGGAGTTACAGAAG
Seq A exon
AAAGGATAAATCGATGATGCAGAAGAGTGATGGCAGAATGGCTGTCAGGATGCAGTTGTGAGGAAAGCAGATGGAGGCCCAAACATAGATGAACGTTTGTGGATTGAGCAGGAGCAGCTTGGCATCTTTG
Seq C2 exon
GTTTGGAGGTACCAAGTAAGAAACTAATGTATATGATGCTGGAAACTTTTAAACACAAACTGCAAATGAATGAAAGGCTTAAAAAAGATATATTTTTGAAGTTACCAGAAAAATGACTATGAAAACAGGGATCAAGAAGACTGATGGAAAACCACTTAGGAGAGAACCATAGAAGATGTACACTTCAGAAGAGGAATGTAACCAGAGAACTCAAAAAAGGAAAACATACCATGTATGCCCTCAAAAGGGTGAAAAAGATTTATATTCGTGTACATGAGATTACTCAAATAGATAATCAAACATATCAGTGCCTTGAACGTGAACAAAACTTTTGTGAAAACTTAGCACGAATGTGTGAGAGAACATATACCGAGGAGAAACCTTATAGATGTGATATGTGTGAGAAAACCTTCATCCAAAGTTCAGATCTTATTTCCCACCAGAGGATCCATAATTACGAGAAACCTTATAAGTGTAGCAAATGTGAGAAGAGCTTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046351_MULTIEX1-3/4=2-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=12.8),PF0013017=C1_1=WD(100=28.3),PF134651=zf-H2C2_2=WD(100=14.4),PF134651=zf-H2C2_2=WD(100=14.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCACTGTGTAGGCCTG
R:
TGGTTCTCTCCTAAGTGGTTTTCC
Band lengths:
242-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types