RnoALTA0045704-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000050562 | Zfp449
Description
zinc finger protein 449 [Source:RGD Symbol;Acc:1584453]
Coordinates
chrX:73410669-73411039:+
Coord C1 exon
chrX:73410669-73410782
Coord A exon
chrX:73410922-73410938
Coord C2 exon
chrX:73410939-73411039
Length
17 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
CCACACAATGACATCTTCAGTCT
3' ss Score
1.12
Exon sequences
Seq C1 exon
GTTATCAGTTACCAAAGCTTGACATGAATTTCCCATTGGATCATAGAGAAGAACCATGGGTAAAAGACTTAGAGGATCCCAAAGAAATGAAACAGTTACTTGATTCCAAGATTG
Seq A exon
TCTCCATTTCTTCTCAG
Seq C2 exon
GTTTTGAGATGGGAATAGAAAATGAAGAAGATGCTTCAAAACAGAAAAAACTGGAAAATCTGTACCCATTTGTTGTAACTTTAGAGGGGAATGCTCTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050562-9-7,9-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.718 A=NA C2=0.310
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.8),PF134651=zf-H2C2_2=WD(100=8.8),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.8),PF134651=zf-H2C2_2=WD(100=8.8),PF134651=zf-H2C2_2=WD(100=8.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGATCCCAAAGAAATGAAACAGT
R:
ACAAATGGGTACAGATTTTCCAGT
Band lengths:
117-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]