RnoEX0101397 @ rn6
Exon Skipping
Gene
ENSRNOG00000050562 | Zfp449
Description
zinc finger protein 449 [Source:RGD Symbol;Acc:1584453]
Coordinates
chrX:73399698-73411022:+
Coord C1 exon
chrX:73399698-73399798
Coord A exon
chrX:73410669-73410782
Coord C2 exon
chrX:73410922-73411022
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCCTTTTGCTTCTTGACCAGGTT
3' ss Score
8.42
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Seq A exon
GTTATCAGTTACCAAAGCTTGACATGAATTTCCCATTGGATCATAGAGAAGAACCATGGGTAAAAGACTTAGAGGATCCCAAAGAAATGAAACAGTTACTTGATTCCAAGATTG
Seq C2 exon
TCTCCATTTCTTCTCAGGTTTTGAGATGGGAATAGAAAATGAAGAAGATGCTTCAAAACAGAAAAAACTGGAAAATCTGTACCCATTTGTTGTAACTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050562-'8-6,'8-5,9-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.718 C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]