HsaEX6053423 @ hg19

Exon Skipping

Gene

ENSG00000173275 | ZNF449

Description

zinc finger protein 449 [Source:HGNC Symbol;Acc:21039]

Coordinates

chrX:134483035-134497077:+

Coord C1 exon

chrX:134483035-134483239

Coord A exon

chrX:134493817-134493930

Coord C2 exon

chrX:134494118-134497077

Length

114 bp

Sequences

Splice sites

3' ss Seq

CCCATCTTTCTTCTGGCCAGGAT

3' ss Score

7.85

5' ss Seq

TAGGTAAGT

5' ss Score

9.66

Exon sequences

Seq C1 exon

GTTGATATGCATGACATGCTCTTGGAAGAACTGGCACCAGTGGGAACGGCACACATACCACCAACCATGCACCTAGAGTCACCTGCACTCCAGGTAATGGGACCTGCCCAGGAGGCCCCAGTAGCAGAGGCATGGATCCCACAGGCAGGGCCACCGGAGCTGAACTATGGTGCTACTGGAGAATGTCAGAACTTTCTGGACCCTG

Seq A exon

GATATCCATTACCAAAACTTGACATGAACTTCTCATTGGAGAATAGAGAAGAGCCATGGGTGAAGGAATTACAGGATTCTAAAGAAATGAAACAATTACTTGATTCCAAGATAG

Seq C2 exon

GTTTTGAGATCGGGATAGAAAATGAAGAAGATACTTCAAAACAGAAAAAAATGGAGACTATGTATCCATTTATTGTAACTTTAGAGGGGAATGCTCTCCAGGGTCCCATTTTGCAAAAAGACTATGTACAGTTAGAAAATCAATGGGAAACCCCCCCAGAGGATTTACAGACAGATTTAGCAAAACTGGTAGATCAGCAGAACCCCACTCTGGGAGAGACACCTGAGAACTCCAACTTGGAAGAACCTCTCAACCCTAAACCCCACAAGAAAAAGAGTCCAGGAGAGAAACCTCACCGATGTCCTCAGTGTGGAAAATGTTTTGCTCGGAAGTCACAACTTACTGGGCATCAGAGAATTCATTCAGGAGAAGAACCTCACAAATGCCCTGAATGTGGGAAAAGATTCCTTCGTAGTTCAGACCTTTATAGACACCAACGACTTCATACAGGGGAGAGACCCTATGAATGCACTGTATGTAAAAAGCGATTCACTCGGCGG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000173275-'6-6,'6-5,7-6=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.432 A=0.487 C2=0.330

Domain overlap (PFAM):

C1:

PF0202312=SCAN=PD(0.1=0.0)

A:

NO

C2:

PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=8.8),PF134651=zf-H2C2_2=WD(100=8.8),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.8),PF134651=zf-H2C2_2=WD(100=8.8),PF134651=zf-H2C2_2=WD(100=8.8)

Main Inclusion Isoform:

ENSP00000339585