BtaEX0041326 @ bosTau6

Exon Skipping

Gene

ENSBTAG00000018090 | ZNF449

Description

zinc finger protein 449 [Source:HGNC Symbol;Acc:HGNC:21039]

Coordinates

chrX:18912542-18918493:+

Coord C1 exon

chrX:18912542-18912746

Coord A exon

chrX:18917301-18917414

Coord C2 exon

chrX:18917607-18918493

Length

114 bp

Sequences

Splice sites

3' ss Seq

CTCATCTTTCTTCTGGCAAGGAT

3' ss Score

4.79

5' ss Seq

TAGGTAAGT

5' ss Score

9.66

Exon sequences

Seq C1 exon

CTCGATAGGCAAGAAATGCTCTTGGAAGAACTGGCACCAGTGGGAATGGCACACATACCACCAAACATCCACCTGGAGTCACCCCCACTCCAAGTAATGGGACCTGCCCCAGAAGTCCCAGTGGCAGAGGCATGGATCCCACAAGCCGGGCCACAGGAGCTGAGCTTCAGTGCTGCTGGGGAAGGCCAGCCCTTTCTCGACCCTG

Seq A exon

GATACCCAATACCAAAACTTGACGTGAGCTTTCCATTGGAGCATAGAGAAGAGGCATGGGTGAAGGAACTGCAAGATTCCAAAGAAATTAAGCAATTACTTGATTCCAAGTTAG

Seq C2 exon

GTTTTGAGATTGGAATAGAAAATGAAGAAGATACTTCAGAAAAACAGAAAAAACTGGAGAATATGTATCCATTTATTGTTACTTTAGAGGGGAATGCTCTTCATGGCCCCATTTTGCAAAAAGACTATGTACAGCTAGAAAATCAATGGGAAACCCCTCCAGAGGATTTACAGGGAGATTTAACAAAACTTGTAGAGCATCAGAACCCCTCAGCAGGAGAGAAACCTGAGAGCTCCAACTTGGAAGAACCTCTCAACCCAAGACCCCATAAGAAGAAGAGTCCGGGTGACAAACCTCACCGATGTTCTCAGTGTGGGAAATGTTTTGCTCGAAAGTCACAACTTACAGGGCACCAGAGAATTCATTCAGGAGAGGAACCTCATAAGTGCCCTGAATGTGGAAAGAGATTCCTCCGTAGTTCAGACCTTTACAGACACCAACGACTTCACACAGGGGAGAGACCCTATGAATGCACTGTGTGTAAAAAGCGATTCACTCGG

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000018090-'5-4,'5-3,6-4

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.290 A=0.051 C2=0.319

Domain overlap (PFAM):

C1:

PF0202312=SCAN=PD(0.1=0.0)

A:

NO

C2:

PF134651=zf-H2C2_2=WD(100=8.8),PF134651=zf-H2C2_2=WD(100=8.8),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.8),PF134651=zf-H2C2_2=WD(100=8.8),PF134651=zf-H2C2_2=WD(100=8.8)

Main Inclusion Isoform:

ENSBTAP00000024080