MmuEX6044391 @ mm10
Exon Skipping
Gene
ENSMUSG00000073176 | Zfp449
Description
zinc finger protein 449 [Source:MGI Symbol;Acc:MGI:1925869]
Coordinates
chrX:56353463-56365674:+
Coord C1 exon
chrX:56353463-56353667
Coord A exon
chrX:56362467-56362580
Coord C2 exon
chrX:56362742-56365674
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCCTTTGCTTCCATGACCAGGTT
3' ss Score
9.15
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATTGACATGGATGACATGCTCTTGGAAGAACTGGCGCCAGTTGGAACAGTACCCATGCCACCCAACTTGCACCTGGAGGAGCCTTCACTCCAGGTGATGGAACCTGTTCAGGAGCCTCCGGTGCCGGATGCCTGGATTCCACAAGCTGGCCCCCAGGATCTGAACTACAGTGCTGATGCTGAATGCCAGTCCTTTCTGGACCCTG
Seq A exon
GTTATCAGTTACCAAAGCTTGACATGAACTTCCCATTGGATCATAGAGAAGAACCATGGGTAAAAGACTTAGAGGATCCCAAAGAAATGAAACAATTACTTGATTCCAAGATTG
Seq C2 exon
GTTTTGAGATGGGAATAGAAAATGAAGAAGATACTTCAAAGGAAAAAAAACTGGAAACTTTGTACCCATTTGTTGTAACTTTAGAAGGGAATGCTCTCCATGGTCCCATTTTGCAGAAAGACTATGTGCAGTTAGAAAACCAATGGGAAACATCCCCAGAGGACTTACAGACAGACCTAACAAAACTCGTAGATCCTCAGAACCCAACTCTAGGAGAGACACCCGAGAGCCCCAGCCTGGAAGAACCTCTCACCCCGAAGCCTCCAAAGAAAAAGAGTCCTGGGGACAAACCTCACCGATGTCCCCAGTGTGGCAAATGTTTCGCTCGGAAGTCACAACTTACAGGGCACCAGCGAATTCATTCAGGAGAAGAACCTCACAAGTGCCCTGAATGCGGAAAAAGGTTCCTGCGTAGCTCTGACCTTTACAGACACCAACGACTTCACACAGGAGAAAGACCCTATGAATGCACTGTATGTAAAAAGCGATTCACTAGGCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073176-'1-6,'1-5,9-6=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.652 A=0.718 C2=0.327
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=8.8),PF134651=zf-H2C2_2=WD(100=8.8),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.8),PF134651=zf-H2C2_2=WD(100=8.8),PF134651=zf-H2C2_2=WD(100=8.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCTGGATTCCACAAGCTG
R:
TGTCTGTAAGTCCTCTGGGGA
Band lengths:
251-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types