RnoALTA0045715-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000003129 | Zfp496
Description
zinc finger protein 496 [Source:RGD Symbol;Acc:1304611]
Coordinates
chr10:45835445-45838766:-
Coord C1 exon
chr10:45838662-45838766
Coord A exon
chr10:45835546-45835548
Coord C2 exon
chr10:45835445-45835545
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
ACCATCCTGGTTTCCTGCAGCAG
3' ss Score
8.77
Exon sequences
Seq C1 exon
ACCTCCAGCCATTCCAAGGAGAGGAAAGAAAGAAATGGGAGGAGCTGCAGGTGCCGGAGCCCCAATCCTGCCAGCAGGTGGTGCTACCTCCAAGTCCTTGTCCAG
Seq A exon
CAG
Seq C2 exon
GAGGTGACCCACCGCCCCTCAAGAACAACCTGGACCAGGAGGTAACCATCGAGATTGTGCTGTCCAGCTCTGGGGACGAGGACTCCCAGCACAGCCCATAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003129-19-16,19-15-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=NA C2=0.422
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF056057=zf-Di19=WD(100=22.4),PF0013017=C1_1=WD(100=22.0),PF0009621=zf-C2H2=WD(100=9.2),PF0009621=zf-C2H2=WD(100=9.6),PF0009621=zf-C2H2=WD(100=9.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGCTACCTCCAAGTCCTT
R:
GGACAGCACAATCTCGATGGT
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]