RnoINT0168288 @ rn6
Intron Retention
Gene
ENSRNOG00000003129 | Zfp496
Description
zinc finger protein 496 [Source:RGD Symbol;Acc:1304611]
Coordinates
chr10:45833264-45838766:-
Coord C1 exon
chr10:45838662-45838766
Coord A exon
chr10:45835546-45838661
Coord C2 exon
chr10:45833264-45835545
Length
3116 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
ATCCTGGTTTCCTGCAGCAGGAG
3' ss Score
3.34
Exon sequences
Seq C1 exon
ACCTCCAGCCATTCCAAGGAGAGGAAAGAAAGAAATGGGAGGAGCTGCAGGTGCCGGAGCCCCAATCCTGCCAGCAGGTGGTGCTACCTCCAAGTCCTTGTCCAG
Seq A exon
GTGAGCAGTGTGGTGTGGGGCCCTGGCGGTGCTTGGTATGAAGTGGAGAACTAGGGATTGGCAAGTGTGTGTGGATTGGGGATTAAACTGCCTGAGGCTCCTGCTGACAGCTGTGACCTTTGCTCATTACCTTTCCTGGGTAGATTGTCAAGTGTTAACTTAACAGTGCTCTGCATGTAAAGAGTGTACCTCTTACCTGATCATGGATAGCCAGAATCCCAAGATGGCCTTGTTAGAGAGCAGGTTCTAGAATGCAGAAGTTGCATGGCTGCCTTCCCAGTATGGAGTCTTGAGTCGTGGAAAAGTAAGCAGCCCCTCCAGAGGCCAGCTAGTGTCCTGTCTTTAACATCCATGTTACCAACATCAGCTGCCAGTACAGGGTACAGCCTTGGCTCCCTCAGGACTGACCACAGCTTCTGTGTGCTAACTCTGAGAAAACACTTCTGGATTTACTGGGTGATGCTGGTCGTGATTGGGAATTCACTGCTAACCCCCTCAGCTCCAGCTCTGACCAGCATCAGTTGTCTCACAAAGCAGACATTTCAGTTTAATAGTCTAGTCTCTTCTTAATCACAGCTGATTCTTCCCAACTTACCAGAACCATAGCATACAAATGGCCCTGAGAGCCTTTATTTCCCCCTGAAACTTTGCAAAACTGGTCTCCATCGCCTGCACTGCCCTGAGCTGTATGTTAGTTCCCTCATTGGCTCACTAAGTTCGGAACACTCACTGGCTTTTCCAGCCCCAAGAAACCTCCCAGAAACCATGCTCAGTCTGTCATAGCAGTGACAACAGGCACCAATTGATTTTAATCACAATTCTAGCCTTAGTAAATTATATATACTTTTTTCAATTATGTGTCTGTTTATGTGACTACATACATGGGAATCTAGTGCCTTCAAAGGCCAGAAGAGTGTGTCAGATCTCCTGGAACAGGAGTTGCAGGCCTGGATCCTTGGGACTGAGCTCAGACCATCTCACCAGCCCTTATACACTATACTTTTTAAAGACTTATTTTGGTCAGTGGTTCTGATAGGGTCAATAGTTCAGTGTCAAGGCCTTCTTGTTGGTGTCAAGGTGAAAGAGGCCATTGCATGGCCAGAGGAACCCCCCTCACCACCACCACCCGACCCCGCACCAAACTGTGTGTGTGCTTGTAGTTCTTGTTGTTTTTGTTTTCTTCTTGTTCTTGTTTCAAGACAGGGTCTCTCTGCAGCCCTGGCTGATCCAAGACATGTTGTGTAAGCCAGGCTGGCTTTAAACTCAAGACTGCCTGCCTCTGCCTTTCCAGTGTAGGATTAAAGGCGGCTGCCACCACATCCATCTTTTTTTTTTTTTTTTTTTAACTGTATTGTGGATTGAATCCAGGGTTTGTGAATGCTAGACAGGTATTCTACTAAGCCATACACCCCTAAAACCTATGGCTTGCTTTTTGAACAGATGACTGGGTCAGCAACTGGAGGGGTATCTCGTTTTAGAACCTGTGCTCAACATGTCCAAGGCCTTGAATTTGGTCCCCAGCATCAGAGAATAGGAGAGTCTGCAGCTCTAGCTCCAATCCACTAGCTGTGGGTGCCCCACCCTCTTTCCTGCCTTGGTCATTGGCCAAAATGAAAACAGACTAAAGCCATCTGTTAAAACTGCCCATCTTGGGGCTGGGGATTTAGCTCAGTGGTGGAGCGCTTACCTAGGAAGTGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACAAAAAAAAAAAAAAAAAAAAAAAAACTGCCCATCTTAAGTTCCGGTTTCTTTTCTTCAGTATCCAAATTTTCTCTCTCCACATTTTAATATAAGCAGCAAAAAGAAAGAAAACAGCGTCTTTAACATAGAACATTCAACATTAGAAATCTCTTCAGCTAAATCTCTTTGTTATCATTTAGCTTCTTGTGACAGAATGCCCAGACACGAATTAGCCACGTTCTGCCATTGCAAGACTCACCTCTCCCTTTCATCAGGACCTCGGTCTGGCTTCCATCGAGAGATCCCCAGAAGCACATTAAATAGCCCAGTTTCTATCATATCTGTCAATAACATGCACCTTGAACCTTCTCCCAGTCTGTCCCTTACCAATTCCAAAGCAGCTTCCACATTTCTTCATGCTTCTTACAACCATACCCATGCCTTCCCTGAGGGTTACTTCAGCTGTTGAGTGTTTGAGTTTTGGGGCACAGTCAGTTTGGTTGGGGTGGTCATATTTCGTCTCGTAGTGAATAAAGAAGAGACCTTTGGGGTTGGGGATTTAGCTCAGTGGTAGAGTGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGACCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAAAAAAAAAAGAAGAGACCTTTGTGGTCTACTATAGCGCTTTTTCTTTCACTGAAACTTAGTAGTAAGTAATGAGACCATTGTCATCAGCAGGGGCTAACCAGCGCCCTCTACCTGTCCAGTCTGAGAGGTCTAGAAGGTGTTTCACAACTTGAGTTGCCCGCCATCAACCTGGAGAAATGGAACACCTACTTGATGAGATCATGTAGATATGGCCACGCAGGCTTAGGACAGCCACCTGGTTTGGATGAGGCCTCTCAGGTAGAAGGCCAAGAGGAGAGATGGGCTTTGAAGCCCAACTAAGCAGACTTGGTTGGGAAACAATGAGGGTCAAATCACACTCCATCATTCCTCCTTGGACACGTCTCTGTGACGGGAGAGTATGTAACATAAATAGTGCAGCACTTGTTAGAGTCTTAGTGCAAAGAGAGGTGTGCTTACCGTGACTCTGTATAAATGCCTTGTTAAAATTTTTACAGGGTGAGTGCCAATTCTTAGACTTTTAAGTCCAGTAGCTCAGGAAGAAATGCTTTGAAAGTAAAGGTCTGGGGGGGAAACAGCAGGAAAGCCAAAAGGACGATACAGTTGCTATACCAACAGGCTGTGCAGGCCAGCCTGACCCTCAGGATTTACAAAGGAACACTACAACCCCGGGGTGTCTGGACCCCCAGTTGAGCCTCTCTGAGTAGGGTTCCCTAGGTCAGGAGTAGGCAGTAGTACAGTTCCACTGACCATCCTGGTTTCCTGCAGCAG
Seq C2 exon
GAGGTGACCCACCGCCCCTCAAGAACAACCTGGACCAGGAGGTAACCATCGAGATTGTGCTGTCCAGCTCTGGGGACGAGGACTCCCAGCACAGCCCATACTGCACAGAGGAGCTAAGGAGCCCCCCGGAAAACCTCCACAGCCTCCCAGCCCCCCAGAGCAACACTAGGCCTGGGGGCGAGGTGCAAAGCTCACAAAAGTCATATGTGTGCCCAAGCTGTGGGAAGGCCTTCCGCTGGAGGGTCAACTTCATCCGCCACCTGCGCAGCCGCAGGGAGCAAAAGCCACACAAATGCTCCGTATGTGGGGAGCTGTTCAGTGACAGCGAGGACCTGGATGGACACCTAGAGACCCATGAGGCCCAGAAGCCCTACAGGTGCACTGTCTGCGGAAAGAGCTTCCGCCTCAACTCTCATCTAATCTCGCACCAACGGATCCACTTGCAGCCAGACAAACAACAGCCCTTGAAGAAGAATGAGGAGGATTCACTGGAAACAGAGAGCACGGGTACCAATGACCTGCTGGAGAAGAGCAAAGCCAAGCTGGGCTTCCAGTGCGCGGACTGTGAGAAGAGCTTCCAGCGACACGACTATCTGGTGAGGCACCGCAGACACTGTCATCTAAAGGACGAGACTCGTCCCTTCCAGTGTCGGTACTGTGTCAAAACTTTCCGACAGAATTACGACCTCCTCCGCCATGAGCGCCTGCACATGAAGCGGCGCTCTAAGCAGGCTCTGAACTCATACTGAGCAGGGTGTGGCCCCACAAGCTAGCCCCTGCCCCAGCACAGAACCCTCACCACCTGCCCTTTGCTCTCAGGTAGTGTCCAACTTCTGGTGCCATGCCTCTTCCTCCCGAGATAAAAAGCAGTCCCCTGAGCATTCCTTCCTTCTACTGTGCCAAAACCCAGGGAGGTAAGGCAACTCTAGCCTCAGATCTACATCTCAGATGTCCAGCTACTCAGCCACTTTCTCTGGCCCTCAGAGGGACTGGGCTGTCCCATCCCAGTGACTTCTAGGGGTATGGTGTCTACAATAGGGAGCTGACCAAAAGCACTGACCTATCCTCAGAAGTCAGCCTGGGGTGACTAGCCAGGGGAGCGTCCCACAGGTGCAGATGGCCAGGCCACTGACCATCAGGAGGTCACATTTTAAAAGTTCATGCATCTATCCCCACATGTCTTCTTTGTACTCCAAGACCCTTCAGAAACGTGTGATGGAAGCTGCCTGTCACCAAGCACATCCCTCCCCACTCTGTCTAGGAGTTGAGAGCCTTCAAGGCGCTTCTGCTAGGTAAGCCAAGCCCTGGAACAGAAGCTTCTAAAGTCTTGTCCTTCATGGGTAGTGACTCCCAGGCATTTGCTTTAGTCCTAGCACTGACATAAGTAACTAGTACTAAACGTAGGCTCTTCTAACAGCACGTGGCATTGTTACAGTTATGGAATTTGCAAGGCCAAGGTCTGGTGTCAGTGGGCTGGTTCTCTCCGAAGCTAGAAGAGTGAATCCTCTTGGGTCTGATGGTCACTGACACTTGTGTGTACCCCAGGGCTTGTACAAACATCTCTCCATCTTTGCCTTCATCTCCACTGCGTCGGTCTCCAAACTTACCTTCTGTACAAGGATCCCAGTCTTTGGGTTGGGGCTCACCCTGTCTACTGTAGCAGAGCCCCACCTTCATCTGGAGTGGCCATTTCCAAATAAAGTCACATCCTGAGGTACTAGGAGTAAGGACCTCAACACTGGGGTTTGAGTGGACGTAGCCAACTCCAGCTAATCCCGTGGTGCTGTTGCATTCCTGCCTTGGGTGAACCAGTGCGACCTTGCGGCAGCGTGCTTGCATTCCTCTGCGTGTTGAGCTCGGTTGTCTGCTTTCAGACTGCTGTCCTCTCTCTGCCAAGGAGAATCTTCATCCATGGCCTTTAAGTTCAAAGCCTGAGATTCTGGGAATGGTTGTTGTTAGGAAACCTAAAGCAACCAAACATGTGGTCCCGCACACTGGTGTCGGCCAGGCTCAATGTCGCTGTGGCTGGACCTGACTGCAGGCAGCCTTGAGCTATAACAGCTCTCACAGTCAGGAGGTCTGGGAAAATGAATTCAAGGCCTCTGGTGCTCTCTCTCCTGATTTTTTCACATCAAGAAGCCTGTAGTCCAGACCCTCAAAGACTATAAGACTTTATAACAGTTTCTTTTTCTGCTCAGTGCATTGCCCAGAAATAGTAAATGCAATAAAACCATTTGGTCACATCTTGGAGAAGAAATAAACTGTTGAAGCTCTTAGTTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003129:ENSRNOT00000058308:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=NA C2=0.422
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF056057=zf-Di19=WD(100=22.4),PF0013017=C1_1=WD(100=22.0),PF0009621=zf-C2H2=WD(100=9.2),PF0009621=zf-C2H2=WD(100=9.6),PF0009621=zf-C2H2=WD(100=9.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]