HsaINT0187414 @ hg19
Intron Retention
Gene
ENSG00000162714 | ZNF496
Description
zinc finger protein 496 [Source:HGNC Symbol;Acc:23713]
Coordinates
chr1:247463622-247471890:-
Coord C1 exon
chr1:247471777-247471890
Coord A exon
chr1:247464579-247471776
Coord C2 exon
chr1:247463622-247464578
Length
7198 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TGCATGTTGCCTTCCTGTAGCTG
3' ss Score
8.52
Exon sequences
Seq C1 exon
ACTCTCCAAGTCTCCAGCCATTCCAGGTAGAAGAAAGAAGGAAACGTGAGGAGCTGCAGGTGCCAGAGTTCCAGGCCTGCCCACAGACGGTGGTGCCTCAAAACACCTACCCAG
Seq A exon
GTAAAGAAGGGTCAGGGAGGTATGGGTTTGTCCCTGTGTGTCTGTGGTGTGTCGCATGAATGTATGTATGCATGTGTGGCATAGGGGATGGTTGTGTTGAATGCATGTGTGCGTGCATACACATGTGGTATATGTGGTGTGCTGCATGTGTGAGTGTGTGCATTCATGGGTGCACCTGTGTGTTGGGGGCATGTGGGTGTGTGATGTAAATGTGCGGTGGTGATGGCATGGGACAGTTAGGAACTGAACCCCTCAGGATCCCCGCCGACCTCTGCTGTGGTGTTCTTAGCTGCTTGCCCTGATTCCGTTGTGCTGGGGTCATTCTCCAGCTCACTCCCAATCCCAGGCTCACCCTCCTTGCCTTTCCCAGGGGCCGGGGAGGGTGTGTCAAAGCAGGGTGCTGCTGTAGTGCTGTTGGTGATGCAGTGAGTGTTTTTCTTCTCTCAGCATGGATGGCCAGCATCCTGGCACAGAATCTTGGAACTGGGATTAAAGAGCAGGTTTCTGGCATACTGAAGCTGCACAGGACTCTTGGAAAGTGTATGTTCCATTCCTGCTTTCAGAGAAATAGCCACAGTGTAGACTCTGAGTCGTCTTGGTAAAAGTCACCACTTCCAGAAGCAGAGGCTACAATACTGCCATCTTTCTCTTCTCAATACAAAACCCAAGCCTCTGATTCTTACCTGAACCCACGTGTCATTGTAGTTTTCTGCAGCTATGGAGACCAACTCACACATATTATCTCTTCTACCTGTGATGCTTTTGAAGGCAAGATTTATGCCATTTTGACCCAGCTCCATGCATCTTGTACTTGGCCCCCTTTCATGCATGGACAAAGGGGCTTTTCTAGTGTGGGAGATCTGAAAGGATGAGATCCTGCTCCACAAGCATGGATGCCCACCCCTGGTTTTCTAAGAAGCCCACCTCTGCGTGCCAAGAGTGATGCATTCATTTGGGGTCCACTTGGAGTTCAAGCGCAGGCCTGATGTTTGTGGTGCACTTTGAATCTTCTCTAGCTTCTTTCTGCCCATAGCATGTCTCTCAGCCCCATCAATATACTTTTAGAAGATGGATGGATGTTCATTTATACACAGGAGTTTTCAACTCCATTCTTCCCTTGCTGGACTCTGACACAGACTGCTCTGAAACAGCCAGAAGCCAAGGGTTGCTACTGAGAAAGGGGAGAGACGATATATTTCAAAGAGTGGGCACTGTACTTATTTTGGTAGCTCCTGCCAGCTTGCCTTCCTAAAAGGCTTTTCCCGCCAGCTGATGCCGGATAGCTGGTGATAAGGTCTGCTTCTCTATATCCATGCCCACGCAGGACACTCCCAGATGTTCAGTTTGTGCCAATCAAATAATGCTACTACATCCGCCACTGAGGTGGAATATCTTTTCTTGTTTATTGTGTTCTATGAATTGCCTAGTTAGTATTCATTTATCCTTATTTATTTATTTTTGCACTCATACTTGTTTTCTTTATGTCCTAAACATTGCACCAGGATTCAGTGATTTACATGATGACATGATTCTGTGCATTGTATCTTCATGGCACCTTCTGAGATAGGTGGCATGATGTCTCTGTATTGCAGCTGGGGCACCCGAGAGCTGAAGTCACTTGCCCAGAGTCCAGTGCTCACAAGCTGTAGGTGGTGGAGTGAAGATTTGAACTCAGGCTGGGCGCAGTGGTTCATGCCTGTAATCTCAGCACTTTGGGAGGCCGAGGCGGGCAGATCGCCTGAGGTTAGGAGTTCAAGACCAGCCTGGCCAACATGGCGAAACCTGTCTCTACTAAAAATACAAAAATTAGCCAGGCACAGTGGCAGACACCTGTAGTCTCAGCTACTGGGGAGGCTCAGGCAGGAGAATCGCTTGAACCTGGGAGGTCAAGGCTGCAGAAATCATGACACTGCACTCCAGTCTGGACAACAGAGCGAGAGTCTGTCTCCAAAAAAAAAAAGAAAAAGAAAAAAAAAACGGCCAGGTGCAGTGGCTCACGCCTGTAATCCCAGCACATTGAGAGGCTGAGGCAGGCAGATCGCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAATATGGCGAAACCCCATCTCCACTAAAAAATATAAAAATTAACCAGGCGTGGTGGTGGGCACCTATAATCCCAGCTGCTTGGGAGGCTGAGGCAGAGAGAATTGCTTGAACTCAGGAGGTAGAGGTTGCAGTGAGCCAAGATCACGCCACTGCGCTCCAGCCTGGGACACGGAGCAAGACTCCATCTTAAAAAAAAAAAAAAAGATTTGAACTCAGGCTGTCAGGCTTCAGACCCATGGCTTTTACTCTACATTACCAAACCACGGTTTGCTTTTTCTGTGGATTCATAGAAACTGCCATCTTTCATAGGTTCTTCTAAATACCAAATCCAAGTCTCTGATTCTTACCTGAACCCACGTGTCGTTGTAGTTTTGGGTCTGAATCCCTTGCCTCTGCTGTATTCATACATAGTTTCTTCCATTTCCCTCAACTTTGTTTATGTGTCTTGCAGCATATAAATGTTTTGTTTTGTTTTGTTTTGTTTTTTAAAGATGGGGTCTCTTTATGTTGCCTAGACTGGTCTTGAAGTCTTGGGCTCAAGCAGCCTTTCTGCTTTGGCTTCCCAAATAGCTGGGGAGACTACAGGCGTGTGCCATCATGCCTGGCTTAAATGTTTTCTTACAGTTTTTAACTGTAGGTACACTTATTCGTCATCTTTTTGGTTTTATGCCTTGCTTGAGAAAGCTTCCCCATTCTAACTTTACAAGAATATTTTACAGTTTTTAATAATGCCTTTATCATTTTGGTTTTTCACATCCAGCTTCCTAGTCTCCCCTGCTGTTCCCCTTAATCCCCTCAGCTCGCAGGAAGTCATTCATTCCTGGCCAGAGCATCCTTCCTGAGGCGATAGTCATGGAGTTACCTGCACGCTGCATGCCTTTGCCACTCCGCCTGCAACAAGCACTTGCAGCAGCCTGGCTGCCTGCTAGCTATGTGGCCACGAGCCCTGGTCCCATCTCCACTGGCTCAATTCCCCTGAAACCTTGGGCAATTTCACTTTTCTGCCTTACATTTTTTATTTGGAAAACAGAAATAATAGTTAAAGCTGCCTTGTACAGTTATTGCTAAGGATTAAATGGTTTAATGCATATACTGGCAGTTAGACCAATAGCTCTTTTCTTTTTTTTCAGACGGAGTCTAGCTCTGTCACCCAGGTTAGAGAACAGTGGCGCGATCTTGGCTTACTGCAACCTCTGCCTCCCGTGTTCCAGCAATTTTCCTGCCTCGGCCTCCCACCATATGTGGGAGCCCACCCACCCATATGTCGTCATGTTCACTTAATTACATCTTGAAAGAGCCTATCTTCAAATACAGTCACATTCTGAGGTCCTTAGGGTTAGGACTTCAACATGAAATTTTGGGACAACACAATTCATCCCCTGTAAGACCTCACCCTCAGGACCTTCAAAATTCATGTCTTTCCCACATGCACAATCCATTCACCTCATCCCAACAGCCCCCAAATTCTCAACCTGTTTCAGCATCAACTGTAAGTCCAAAATCTCATCTAAATATCAACATCTCAAATCAGGTATGGGTTAGACTTGAAGTATGATTCATCCTGAGGCAAAACCCTCTCCAGCTATGAACTGTGAAACCAGATGTTTTTTGCTTCCAAAATACAACTGTGAGAAAAGCATAGCATAGACCATTCTCATTCCAAAATAGAGAAATCCAAGAGAAGAAAGGGTAATGGGTCCCAAGCAAGTCTTAAATCTAGCAGGTCAGGGCTAGGTGTGGTGTGGCTCGTGCCTATAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACCTGAGGTCAGTAGTTCGAGACTGCACTGGCAAAAATGGGGAAACCCTCTCTCTACTAAAAATACAAAAATTAGCCAGACGTGGTGGCACACACCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCCAAGATCATGCCATTGCACTCCAGCCTGGGCAGCAAGAGCGAAACCCCATCTCAAAAAAAAAAAAAAAAAATCTAGCAGGTCATTTCCATGGGATTTTAAGGCTCAGCAATAACCTCTGGCTCAGTTCTCTGTTCTCCAGGCCCAGCAGGCTACTGGCCCTGCTCTTTGGAACTCAGAAGGAAATGACTTCACCTCCTGAGCCTGTACTCTCTGGTCCCATGATGACAGTGGCAGTCCTGTAACCTCTGAGCCACCTTTGGAGTCATTCTTCCCTTTTCTTGAAGGATAGTACATATTCATAGCCAGATAGATCTATCGGCCAGTTTGTAGAATCCCAGAAGTCCTAGCCTTCTTTTATTTCATCCCATCTCTTTTCCTTTCAGTTCCAGCTGGCAGTGTTTCTGCTGGTATATAATACTCAGAAACCCTGCCCTCCATGCAGTCCACAGGGTTGCAGGCCGTCAGACGAGGGTGTCCTCCATAGACCTTCCTGGATAACCTCATCTCTGTTCCTGGCTTCTGTTGAGATGGTTGATTGGATCCGTGAATCATACCCAGAATCTCTTTAACAAATGATGAGCCAGCCACACTCTTGGTGTCTCTCCAGTGCACGCTTTCTTATTTTTTGCCGTATGGATAGACAGAATTTTCCAAATCTTGAAGTCATGGTTCCTTTTTGCTACAACAATTCCTTCTTCAGTTTATCTCTCTCATCTCACGTTTCACTATAAGCGGCAAAAAACTAGTCTTTGCCTTTGACACTTTGCTTCGATACCTCCTCAGCTCAGTATCCGAGTTCCTTACTTACAATTTCTGTTTCCACAGAACAGTTGAATATGGTTTGGCCAAATTCTTTGCCACTTTATAATTGGAGGATCTCCTTTTCTCCAATTTCCTATAACGTCCGTATTTCTACCAGCCACTTCCTCAAGGCTTTTTAAACATGCACTTCAGAACTCTCCTGGCCTCTCCCCATGACCTAGTTCTAAAATCACTTCGACAGTTTTTGGTCTTTGTTTTAGCTGCACCCTACTTCCTGGTGCCAAAGTCTATGTTAGTCTACTGTGGCTACCATAACAAGGTACCACAGGCTGGGTGACTTAAACAACAGAAACTTACTTTCTTACAATTCCAGAAGCAACAAGTCCAGAATCAAGGCTTCAGCAGAGCTGGTGTCTTCCAAGGCCTTTCTCGTCTTGGAGACGGCTCCCATCTTGCTGTGTCCTCACAGGGTCCTTCCCTCTGTTGAAGTCTGCCTCCAGTCTCCTCCTCTTAGAAGACCAGTGATTTTGGATTGGCCCCACCATCTGACTTCATTTTGACTTAATTACTTCTTGAAAGACCCTATCTCCAAGTAATCACATTCTGAGGCTCTATGGGTTAGGGCTTCATCATGTAAATTTTCAGGGGGACACAATTTCGCCCATAACATGCACTGTCTGCTCTCATAATTCCATCTCCTCGCCCAGTTAACAAGTAAGAGATCTTAGCGGTCCACCTTGTCACTTTGTTTTCTTCTTCCACCCAAGTCCATTAACAGAAGTCAACTGCTGATCAAGTACCTTGTCATCGGCAGCCTGGTAAAAGTTACACCTTGCTCTTGTCTCCACCCCATGAGGTCCACAAAGTACATCATACACATGACCTCACCTGCCCCACCAGCAGCTTAGAGCAACGGGCTGCCACTGTCATTCTCACCTTGTAGACGAGATGACCCAAGCTCAGAGAAGCTGTCTGGCTGGAACGAGGTTCCTGCAGCTCGAAAACCAAGAGTCGAGATAAGCGTCAAACATAGCCTCTCGGCGGGCGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGTGGATCACCTGAGATGGGTGGCTCGCTTGAGCCCAGGAGTTTGAGACCAGCCTGGGCAACATAATGTGACCCCATCTGTACAAAAAATTAAAAACACATGCACACACACAAACACAATCTCTGTCTTCATCTGATGATTTCCCTCCTATACTACGTGGGTTCTTGGCAGACTCAGTACCCACTCCCAGACTCATGTTCCCCCGACCCCCTTGTGACTGAGGGACAAATGCCCCCTCCGCTTCCACCATTGCCCTTTATCTCTCTGCTCTCCATAGCCTCTGTGTCTTCCTGCCCTGCTTCTGTTTGTCCAACTTCTCCTGTCCTGAGCTGCTCTGACTAGCCAGGGCTCTCCTCCCCACAGTCATGAAGCCCAGACTAACCATGTTCCTACTCTTATCTGGGAGGGCCTGGTTCACTCCCCCCAAGTTCTAGATTTGAGTTCTACATTTCACAGCAGTGAGGAAACAGGCCACCTGTATGGTGGGCTCTGCTCCATAAGCCGGGACCTCAGGCCGGGCTCTGCACTGTCCACCCAGCCCCGCCCCGTGGTTCCACCTTCCCAACATCACAGACTCAGGATGCAGGAAGTCCAGAGCAGCTTTATCCATCACCACCTGTGGCCTCAGAAATGCGGTGCTACTGGGAGCCGGGGAGCTGTGGGGGACCCAGGACTCTGGGCAGTCTGGGACTGTTGAGCAGCCTAGCAAGGCTGAGTAGCATTTCAGCCCTCCTTCCTGGCACAGATCACCTTAGTTTATGTGTAAACATGGCAACCAATAGGTCATCGGGTTGCGTCCAGGAGCAAATAGGAATGTGCATGTCAAGTCTAGCACAGTCCCTGGAGCATGCAAGTGCCCAGCACATGATATGTGTAGGTTGTAGAGTCTTCCTCTCTCAAGTCCTTTCACTATCCTGATAGAGCTTTCCCCCATGCCTTGTTAAGTGCATGATCTGTAAATGGTCAAGGCTTTACCCAGATAAATACAGACTCCTAGAGCTTGGGGGGATGGGGTGGTCTCCGTGGGTAGAGAACAAAAGGGTTGGGGGTGGAGATAAGGGAAAATGGCTGGGAAGAGGGAGAGCAAGGTGCCCAGCATGCTCTGGACACAGCGGGGCCCATGCTGAAGATTTCTTCCTCACAGGCTACACCAGTGGCCCCTGCAGGGCTGGCCAGGCCGCCCCGGTCACCGAGGACCATTGTAAAAACACGGGTTTGTAAACTCCAAGCTGAGTGTTCCTCCGCCGCGGTCATAGGGGCTGGGATGTGGCCTGTGCAGCGTCGCTGACCTGCATGTTGCCTTCCTGTAG
Seq C2 exon
CTGGCGGCAACCCGCGATCTCTAGAGAACAGCCTGGATGAAGAAGTGACCATCGAGATCGTTCTCTCCAGCTCTGGGGACGAGGACTCCCAGCATGGCCCGTACTGCACAGAAGAGCTGGGGAGCCCCACAGAGAAGCAGCGCAGCCTCCCCGCCTCCCACCGGAGCAGCACCGAGGCCGGAGGCGAGGTGCAGACCTCCAAGAAGTCCTACGTGTGTCCGAACTGTGGGAAAATCTTCCGCTGGAGGGTCAACTTCATCCGGCATCTGCGGAGCCGCAGGGAGCAGGAGAAGCCGCACGAGTGCTCGGTGTGCGGGGAGCTGTTCAGCGACAGCGAGGACCTGGATGGGCACCTAGAGAGCCACGAGGCCCAGAAGCCTTACCGGTGTGGTGCCTGCGGGAAGAGCTTCCGCCTGAACTCCCACCTGCTCTCCCACCGGCGGATACACCTGCAGCCGGACAGACTCCAGCCGGTGGAGAAGAGAGAGCAGGCGGCATCCGAGGACGCGGACAAGGGTCCCAAAGAGCCGCTGGAAAACGGCAAGGCCAAACTGAGCTTCCAGTGCTGTGAGTGTGGGAAGGCCTTCCAGCGGCACGACCACCTGGCTCGGCACCGCAGCCACTTTCACCTGAAGGACAAAGCCCGGCCCTTCCAGTGCCGGTACTGCGTCAAGAGCTTCACGCAGAACTATGACCTCCTCCGCCACGAGCGCCTGCACATGAAGCGCCGTTCCAAGCAGGCTCTGAACTCCTACTGAGCCTCTCCGCCTGGGGCGGCCTCACCCTGGCTGGTGCTGCCCCCTCACCTTGGTACTGATCAGCGCCCCCACCCAGGACATACCTTCCCCAGGATAGAGAGCACACCTCCCTCCTGTCCTTGCTCTCAGGTAGTGAGCGTTCGGGTGGTGCCATGGGAGCACTCTCCCTCCCCCAGGTAATGAAAGAGTGGCCAAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162714-ZNF496:NM_032752:8
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.889 A=NA C2=0.484
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=8.7),PF139121=zf-C2H2_6=WD(100=9.9),PF0009621=zf-C2H2=WD(100=9.1),PF0009621=zf-C2H2=WD(100=9.5),PF0009621=zf-C2H2=WD(100=9.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)