MmuINT0180347 @ mm10
Intron Retention
Gene
ENSMUSG00000020472 | Zkscan17
Description
zinc finger with KRAB and SCAN domains 17 [Source:MGI Symbol;Acc:MGI:2679270]
Coordinates
chr11:59485520-59492228:-
Coord C1 exon
chr11:59492115-59492228
Coord A exon
chr11:59487818-59492114
Coord C2 exon
chr11:59485520-59487817
Length
4297 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ACCATACCGGTTTCCTGTAGCAG
3' ss Score
5.38
Exon sequences
Seq C1 exon
ACCTTTCCAGCCTCCAGCCATTCCAAGGAGAAGAAAGAAGGAAGTGGGAGGAGCTGCAGGTGCCAGAGCTCCAGCCCTGCCCACAGGTGGTGCTCAGTCAGAGTCCCTGTCCAG
Seq A exon
GTGAGGAGCCTGGTGTGCTTGGTATGAAGTGGAGAACTGGGGCTGGGTATTAAACTGCCCAAGGCTCCTGCTGACTGCTGCCCTGCTCATTGCCTTGCCCGGGTGGACTGTCAAGGCTAACCTAGCACTGCTCTGTATGTCGTGAGTGTGCCTTTACCTGATTGTGGATAACCAGAATCCCAAGATGATCTCATTAAGAGGAGCTTCTAGAATGCAGAAGCTGCACGGTTGCCCTCCCTCCCTGTATGGAGTCTTGAGTCATGGAAAAGTAACCACCAGCAGAGGCCGACTAGTGTCCTGTCTTTAACATTCATATTTCTAGCTTCAGCTGCCAGTGCCAGGGACAGCTTCTGTGTGCTGACTATGAGAAATCACTTCCCAGGTTTTACTGGGTGTGGTGGTCTCTTCTTTATCTTTTTTTTTTTCCTTGTTTTTTTTTGTTTTTTCAAGACAGGGTTTCCAGGATAGCCTTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGTCCTTGAACTCAGAAATCTGCCTGTCTCTACCCCCCAAGTGCTGGGATTAAAGCTGTGGGCCACCACTGCCTGGCGATGCTGGTCTCTTCGTTTTTTGTTTTGTTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGTGCTAGAACTCAGAAACCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCGCCACCACCTCCTGGCGCTGGTCTCTTCTTAATCACTGCTGACTCCTTAGCTCCAGCTGACCAGCATCAATTGTTCCAACAAAGCAGATGTTTCAGTTTAGTAGTTCTGGTCTCTTCTTAGTCACAGCTGTTTCTTCCCAACTGACGAGAACCATGGCATACAAATGGCGCTGAGCGTCTGTCTTTCCCCCCTGAAACATTACAAATGTTGCCTCTTGTGCACTGCCCTGAGCTGAACGTTAGTTCCCTCATTAGTTCACTAAGCTCAGAACACTCAGTGGCTTTTCCAGCCCAAAGTCCAAATGCCACCATAATCCTCCAGAGACTGTGCTCAGTCGGTCACAGCAGTGACAACCTTGCACCAATTGATTTTAATCTTTCTGTTGCGAAAAACACAATTATATCCTTAGTAAATTATATGATTTTTTTCCGATTATGTGTCTATCTGTGTGACTGTGTACATGTGAATCTAGTACCTTCAAAGGCCGGAAGAGTGTGTAAGATCCCCAGGAGCTGGAGTGACAGGCCTGGATCCTTGTGACTGAGCACAGAGCCGTCTCACCAGCCCTTATACAGTTTACTTTCTAAAGACTGTTCTGATTCAGCATCAGGGCCTTCTTCCTGTTGCTCTCAAGGCGACAGAGGCCATCGTATATATATCCAGAGACCCAGCCCTCCTAGCTTCTGTACAAGGTTGCTCTGAGACAGTAATCATGTGTCCATTATTTATGTGAACACCAGAGCTCCTATCAGCTGTGCTGAGGTCCTGAAAGCTGGAGTCACTGGCAGCCATGTATTTTTTGTAGTTTGTTTGGGGTTCTTATTGTTGTTTTTGTTTTCTTATTCTTGTTGTTTGGAGACAGTGTCTCTCTACAGCCCTAGCTGGTCTGAAACATGTTATGTAGACCAGGCTGGCTTCACACTCAGAAAGCTGCCTGCCTCTGCCTTTCCAGTGCTGGGATGAAGGGCGGGCTGCCGCCACAGCCAGCTTTTTTTTCTTTCTTCTTTTTTTTTTTTTCTGTACTGTGGATTGAACCCAGCCTGGGTTTGTGAATGCTAGATGAGTATTCTGCTAAGCCATTCATGCCTAAAACCTAGGCTTGCTTTTTGAGCTGATGATCGGGTCAGAGACTGGAGGCATATCTCATTTAGAACCTGTGCTTAGCGTGTACAAGGACAGGAATTTGGTCCCCAACATCACAGAGTAGGAAAGTTTGGAGCTCTAGCTCCAACTGTAGCTATTGCGTATTTGGACGCCCCACCCCCTTTCCCTAGGGTTTGGTTTTTTTTTTTTTTTTTTTTTGCTAAAATGAAAACTGACTAAAGCCACTTAAGAAAACACTGCCCATCTTCCAGTTCCAGTTTCTTTTCTTCAGTATCTAAATTTTCTCTCTCCAGATTTTAATTTAAGCAGCAAAAAGAAAGAAAACAGCATCTTCAACATAGAACATTCAACATTAGCAATCTCTTCAGCTAAATCTCCTTTTTATCACTTAGCTTCTTGTGACAGAATGCCTAGCCATGGCTTAGCCACGTTCCACCACTGGGCACGAATCACCTTCCCCTTACAGCAGGACTTCGTGCTGGTTTTCATCTGAGAGGTTCCTCCCAGAAGCACTTTAAATAGGCCTGTTTCTGCCAGTCACCTCTTCACATCTGTCAATAACACGCACCGTAAGCCTTCTCCCGGTTCCAAAGCAGCTTCCGCACGTCCCCATGCTTCTAATAGCTGTCCCCATGATAGAAAAGCCATGAGCCTGAGGCTGGCAGAGTAGCTCATCACAGACGGAGATTTTTTTTTATTTTCTTAAATGTGTGTGTATTTGCTGGTAGAGGTCAGAAGAGGGCATCAACTCCCCTAGAAATGAGTAATAGGCCCTTATGAGCTGCCCCATGGTGCTGTATTTCCCCTCTAAGCAGCTGCTACGGCCTCACACTGGCCAAGCTTTAAGCACATAAAAGTTTCTCTCAGTTGCAGAGACCACTAGTGCAGGATCAGGGTCTCCTTAGGGTAGGTTTCTTCCCAGGTCTCCCTCTCACCTCCCACCTCTTCACTGTGACCTACAGGGTCTCACTGCATCAGGTTTCCTCTTGTAGAAACACAAGTTGTGTTGGGACCTATTAGCCTCATTTTAACTTACCTCTGTCTTCTCCTATTTAAAACCAGTGGTGTGGTAAAAGGATTCATTGTTATTTTTTCCTGTATGTACTGGTGCGCATCCTTCCTGTCACCCGCTGCTCCTCTTTGCAAGTAGCTTCCTTTCTGCTTGAGATACTGAGTATTAGAGGCAGAGCTTTGTATGTGCCAGGCAAGCTCTTATACTAAGTTACCTAGGCTAGCCTTGAACTTCCTCTGTAACCCTGATGATTCTTAAACTTTCGGGTATTGTGTCTGGTTTTTTGTTTTGTTTTCTTTTTTCTACACGGGGTTTCTCTGTGTAGCCCTAAACTGTTGAGGAACTTGCTCTGTAGACCAGGCTGACCTCAAACTGCCTGCCTCTCCTCCTGGGTGCTAGGATCAAAGATGTGCACCACTACTGTCTGGCTCCATTCTTAAACTTTCAATCCTCCTGCCTCAGCCTCCTGTGCAGCTTGCATTACAGGGTGTCCCACCAGGCTGGCTCATTTTTCCCTTCTTAAGAGGTTTCTTTTCATTTTGTATCTGTGTATGCAGGTGGTTGCCTGTGGAGACCATCAGAGTCTCTGGAGGAGGAGTTCTAGGTTGTAAGCTGCATGTCCTTGGAACAGAGTGGCTGACCTGGAACTCACTCTGTAGACCAGGCCAGCCTCGAACTCAGATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCGTCACCAGTGTCCAGCAGCAGCAAGCACTCTTTACTAAGCTGTCTCTCCAGTCTTCCTTTCAAAATTCTAGGTTCTACATAGAAGTCAATTTGGCTTTTGAAAAGCTGTCCCAGATATAGTGGCACTCTGCTACCCTGAGGGTTACTTCAGCTGTTGAGTGTTTGAGTTTGGGGGCACAGTCAGTTTGGTTGGGACTGTCATAGATATTTCATCTCCTAGTGCATAAAGAAGAGACCTTTGTAGTCTACAGTAGCACTTTTTTGTTTGTTTGTTTGTTTTTTGTCTTTTCTTTTTGTTTTTTTTTGAGACAGGGTTTCTCTGTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCACCACCACGCCTGGCAAGTAATATAAATGTTGAAATTTTTCACAGGTGAGTGTCAGTTCTTAGAATTTTAAGTCCCAGTAGCTCAGGAAGAAATGGTTTTGAAAGTGAAGGATTAGGGGAAAACAGCAGGAAAGCCAGAAAGAAAGAGACAATTGCTATCCCAACAGCCTGTACTGGGCAACCAGGCCCTCAGGAGTCACCAAGGAACACTACAACCCCAGGGAGTCTGGGCCCACAGTTAAGCCTTTCTAAGTAGGGTCCCTAAGATCTGGACAGTTCCACTGACCATACCGGTTTCCTGTAG
Seq C2 exon
CAGGAGGTGACCCGCCAGCCCTCAAGAGCAGTCTGGACCAGGAGGTGACCATCGAGATCGTGCTGTCCAGCTCTGGGGATGAGGACTCCCAGCACAGCCCATACTGCACAGAGGAGCTGAGGAGCCCTCCAGAAGACCTGCACAGTGTCCCAGCCCACCAGAGCAACGCTAGTGCTGAGGGGGAGGTGCAAACCTCACAGAAATCTTACGTGTGCCCAAACTGTGGAAAGATCTTCCGCTGGAGGGTCAACTTCATCCGGCACCTGCGCAGCCGCAGGGAGCAGAAGCCACACAAATGCTCAGTGTGCGGGGAGTTATTCAGTGACAGCGAGGACCTGGATGGTCACCTAGAGACCCACGAGGCCCAGAAGCCCTACAGGTGCACTGCCTGCGGGAAGAGCTTCCGCCTCAACTCACACCTCATCTCTCACCGCCGGATCCACCTGCAGCCAGCCAGCCAGCAGCCCATGAAGAAGAGTGAGGAAGAAGCTCTGGAAACAGAGGGCACGGGTGCCAGCGACCTGCTGGAGAAGAGCAAAGCCAAGCTGAGCTTCCAGTGTGGGGACTGTGAGAAGAGCTTCCAGCGGCATGACCATCTGGTGAGACACCGTAGACACTGTCATCTAAAGGATGAGACCCGTCCCTTCCAGTGTCGGTACTGTGTCAAAACTTTCCGACAGAATTATGACCTCCTCCGCCATGAGCGCCTGCACATGAAGCGACGCTCCAAGCAGGCTCTCAACTCATACTGAGCAGGGTGTGGCCCCACAAGCCAGCCCCTGCCCCAGCACAGAACCCTCACCACCTGCCCTTTGCTCTCAGGTAGTGTCTAACTTCTGGTGCCATGCCTCTTGCTCCCCAGATAAAAAGCAGTCCCCTGCGCATTCCTTCTACTGTGCCAAAACCCAGGGAGGTGATCCAACCTCAAGACCTGCATCTCTGGATCTTCAGCCACTTGCTCTGGCCCTCAGTGGGGCTGGGCTACCCCCATCCCAGTGGTGTCTAGGGATGGGGTGAATACAGTAGGGAGCTGGCCAAAAGCCTGCACTGACGTCTCCTCAGAAGTCAGCCTGGGTTTAGTCAGGGTGTCAGCCAGGGGAGCATCCCACAGATCCACCGACGGCCAGGCCACTGGCCATCAGGAGGTCACATTTTGAAAGTTAATGAATTTATCCCCACATCTTCTTTGTGCCCCAAGACCCTTCAGAAATGTGTGCTGGAAGTTGCCTGTCACCACTCACATTCCTTCCCGTCCTGTCTAGGAGCTGAGAGCCAGGCCCTCAAGGCTCTTCTGGGCAAGCCCTGCCCTGGAACAGAAGCTTCTGTGAAGTCGTCCTTCATGGGTAGAGATTCCAAGGCATTTATTTAGCTTCCTAGCGCTGTCGTCACTAGTACTAAACATAGGCTCTTCTAACAGCACACAGCATTGTCACAGTTATGGAATTTGCAAAGCTAGGTCCGGTGTCAGTGGGCTGGTTCTTTCCGAGGCTAGAAGGGGGAATGAATCATTCTGGGCCTGATGGTCACTGACACTTGTCTGTCCCCGGGGACTTGTACAACCATCTCTCCATCTTTGCCTTCATCTCCGCTGTGTCAGTCTCCAAGCTTACCTTTTATACAAGGATCCCAGTCTTGGGTTGGGGCTCACCCTGTCTACTGTAGCAGAGCCCCACCTTCATCTGGAGTGGCCATTTCCAAATACAGTCACATCCTGAGGTACTAGGAGTCAGGACCTCAACACTGGGGTTTGAGTGGACATAGCCACAACTCCAGTTAATCCCATGGTGCTGTTGCTGTTCCTGCCTCAGATGAACCAATGCAACCTTGAGGCAGCCATTCCTTTGAATGTTGAGCTCAGTTGTCTGCTTTCAGGGCTGCTGTCCTCTGCCAGGGAGAATCTTCATCCATGGCCTTTAAGTTCAGAGCCTGAGAGTCTGGGAGTTGTTGTTGCTAGGAAACCTCAAGCAACCAAACACGTGGTCCCACACTGCCCTGGCACACTGGTGTTGGCCAGGCTCAGTGTGGCTGTGACTGGACCTGAGAGCTGCAGGCAGCCAGTGGGCTGTAACGGCTCTCAGCAGATAGGAGGTTTGGGAAATGAGTTCAAGGCCTCTGGTGCTCTCTGTCCTGATTTTCACATGAAGAAGCCTCTAGTCCAGACCCAATCAAAGACTCTTAAGACTTTGGAACAGAGTTTCTTTTTCTGCTCAGTGCATCACCCAGAAATAGTAAATGCAATAAAACCATTTGGTCACACCTTGGAGAAGAAATAAACTGTGGAAGCTCTTAGTTTCTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020472:ENSMUST00000013262:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=NA C2=0.408
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=8.8),PF0013017=C1_1=WD(100=23.5),PF0009621=zf-C2H2=WD(100=9.2),PF0009621=zf-C2H2=WD(100=9.6),PF0009621=zf-C2H2=WD(100=9.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types