RnoALTA0045806-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000060129 | Zfp655
Description
zinc finger protein 655 [Source:RGD Symbol;Acc:1309158]
Coordinates
chr12:11142928-11144754:-
Coord C1 exon
chr12:11144723-11144754
Coord A exon
NA
Coord C2 exon
chr12:11142928-11143065
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
GTCATTGTCTCCCTGAACAGGGA
3' ss Score
9.42
Exon sequences
Seq C1 exon
GGGACAGTCTCTAGGCCCGCCTCTCCACCTGG
Seq A exon
NA
Seq C2 exon
GGATGGAGGAAATAACATCCCAAGAAGCAGCAGAATCACCAAGGGTCCAGTTTCAGTCTTTGGAGAGCCAGTCTGAATGTCTTTCCCCAGAGCTTCGGTTTCTGCGGGACACAGAGATGGAGCAGGGATACACTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060129-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.430
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCTAGGCCCGCCTCTC
R:
AACCGAAGCTCTGGGGAAAGA
Band lengths:
126-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]