RnoALTA0045806-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000060129 | Zfp655
Description
zinc finger protein 655 [Source:RGD Symbol;Acc:1309158]
Coordinates
chr12:11142928-11144754:-
Coord C1 exon
chr12:11144723-11144754
Coord A exon
chr12:11143066-11143090
Coord C2 exon
chr12:11142928-11143065
Length
25 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CTCCTAATCTCACCCTGCAGTGA
3' ss Score
7.64
Exon sequences
Seq C1 exon
GGGACAGTCTCTAGGCCCGCCTCTCCACCTGG
Seq A exon
TGATGGTCATTGTCTCCCTGAACAG
Seq C2 exon
GGATGGAGGAAATAACATCCCAAGAAGCAGCAGAATCACCAAGGGTCCAGTTTCAGTCTTTGGAGAGCCAGTCTGAATGTCTTTCCCCAGAGCTTCGGTTTCTGCGGGACACAGAGATGGAGCAGGGATACACTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060129-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.430
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCTAGGCCCGCCTCTC
R:
AACCGAAGCTCTGGGGAAAGA
Band lengths:
126-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]