Special

HsaALTA0009876-1/2 @ hg38

Alternative 3'ss

Gene
ENSG00000197343 | ZNF655
Description
zinc finger protein 655 [Source:HGNC Symbol;Acc:HGNC:30899]
Coordinates
chr7:99558768-99560695:+
Coord C1 exon
chr7:99558768-99559017
Coord A exon
NA
Coord C2 exon
chr7:99560533-99560695
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTCTGT
5' ss Score
3.05
3' ss Seq
CTCTTAATCTTACCTTGCAGTGA
3' ss Score
9.35
Exon sequences
Seq C1 exon
CAGGCCCGCCCCTCCCCTCGGTGAGTACCCGGAAGCCGTTTTGGGGTCGCAGCGGGGTGGCAGCTTGTTTTGCCTTCACGGGAGTAGAAGGAGGCGGCGTCCGGCCGCGGCCGACGGTAGTTCGCTTCCCCGAGAGTGCGCGGAGGCCCGGGTGCGAGGAGGGCCTGTTTCTCTTCAGCCCTGGTTCATTCACCTCGCGGACCGAGGGCCCCGCCGTCAGGAGCCGGCGACCGTGCCCTGGTGCGAGCTG
Seq A exon
NA
Seq C2 exon
TGATGGTCATTGTCCTCCAGAGCAGTGATGGAGGAAATACCAGCCCAGGAAGCAGCAGGGTCACCAAGGGTCCAGTTTCAGTCTTTGGAGACCCAGTCTGAGTGTCTGTCCCCAGAGCCTCAGTTTGTGCAGGACACCGACATGGAACAGGGACTCACTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197343-2-6,2-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
5' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=0.926
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSP00000393876





     
                   









    
Main Skipping Isoform:
ENSP00000403500





     
      









    
Other Inclusion Isoforms:
ENSP00000252713, ENSP00000322363, ENSP00000350530, ENSP00000377718, ENSP00000389260, ENSP00000390295, ENSP00000392244, ENSP00000392980, ENSP00000393750, ENSP00000395799, ENSP00000396396, ENSP00000398872, ENSP00000401282, ENSP00000408555, ENSP00000414007, ENSP00000414969, ENSP00000419135, ENSP00000486262
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


hg19




Conservation


Mouse
(mm10)
chr5:145233441-145233602 
HIGH PSI
MmuALTA0020707-2/2
(Zfp655)
Mouse
(mm9)
chr5:145994308-145994309 
HIGH PSI
MmuALTA0020707-2/2
(Zfp655)
Rat
(rn6)
chr12:11142928-11143090 
ALTERNATIVE
RnoALTA0045806-2/2
(Zfp655)
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CAGCCCTGGTTCATTCACCTC

				
R: 
GCTTCCTGGGCTGGTATTTCC

				
Band lengths: 
128-154

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Autistic and control brains
  • Pre-implantation embryo development





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