HsaALTA0009876-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000197343 | ZNF655
Description
zinc finger protein 655 [Source:HGNC Symbol;Acc:30899]
Coordinates
chr7:99156029-99158318:+
Coord C1 exon
chr7:99156029-99156410
Coord A exon
NA
Coord C2 exon
chr7:99158156-99158318
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
CTCTTAATCTTACCTTGCAGTGA
3' ss Score
9.35
Exon sequences
Seq C1 exon
AACGGCTAGAGACGCCCAGTGAGTTAGCATGGAGGGCAGTGGGACCGGAAAAAGACGTGGAAAAGCTGCGAAAACGAGCCTTCGAATCATGGACGCGCGGGCCCAGCTCCTCCTCCGAGTTCCTCATCCGGGGCCGTCACTCACATCCGGGGCCCTCACTCACATCCGGGACCCTCATCCGGGGCTCTCACCCACATCCGGGACCCTCATGCCTGGGCGGAGGAGGGGGGGCCCTCATTCGGGACCCTGCACTCCGTCGCCGGAAGTGCCACCGAGAAGCGCCGGCCTCGGGGCTGTCTACAGCGGCCCGGGAGAGGCTGTGGTGGCCCCGAGCGCGAGTGTGTAGGTGACAGGACAGCGGCCAGGCCCGCCCCTCCCCTCG
Seq A exon
NA
Seq C2 exon
TGATGGTCATTGTCCTCCAGAGCAGTGATGGAGGAAATACCAGCCCAGGAAGCAGCAGGGTCACCAAGGGTCCAGTTTCAGTCTTTGGAGACCCAGTCTGAGTGTCTGTCCCCAGAGCCTCAGTTTGTGCAGGACACCGACATGGAACAGGGACTCACTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197343-0-6,0-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.925
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
ENSP00000252713, ENSP00000322363, ENSP00000350530, ENSP00000377718, ENSP00000389260, ENSP00000390295, ENSP00000392244, ENSP00000392980, ENSP00000393750, ENSP00000395799, ENSP00000396396, ENSP00000398872, ENSP00000401282, ENSP00000401282f9748A, ENSP00000408555, ENSP00000414007, ENSP00000414969, ENSP00000419135
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTAGGTGACAGGACAGC
R:
GAAACTGGACCCTTGGTGACC
Band lengths:
123-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)