MmuALTA0020707-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000007812 | Zfp655
Description
zinc finger protein 655 [Source:MGI Symbol;Acc:MGI:1919861]
Coordinates
chr5:145992592-145994471:+
Coord C1 exon
chr5:145992592-145992700
Coord A exon
chr5:145994310-145994333
Coord C2 exon
chr5:145994334-145994471
Length
24 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TTCTCACTCTCACCCTGCAGTGA
3' ss Score
9.2
Exon sequences
Seq C1 exon
AAGGCGTCAGCCTTCTGGCAGTCGAGAGAGTGGCCCCGGACAGGCTGGTGCAGCTGAGCGAGGAGCGCCTCCGTGACGGGACAGTCTCCAGGCCCGCCTCTCCACCTGG
Seq A exon
TGATGGTCATTGTCCCCTGAACAG
Seq C2 exon
GGATGGAGGAGGTAACATCCCAAGAAGCCGCAGAGTCACCCAGGGGCCACTTCCAGCCTTTGGAGAACCAGTCTGAATGTCTTTCCCCAGAGCTTCGGTTTCTGCAGGACACGGACATGGAGCAGGGATTCAGTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007812-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.743
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACGGGACAGTCTCCAGG
R:
TCAGACTGGTTCTCCAAAGGC
Band lengths:
113-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: