RnoALTA0045810-2/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000001317 | Zfp68
Description
zinc finger protein 68 [Source:RGD Symbol;Acc:1310463]
Coordinates
chr12:18155264-18155961:+
Coord C1 exon
chr12:18155264-18155376
Coord A exon
chr12:18155866-18155871
Coord C2 exon
chr12:18155872-18155961
Length
6 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CAGTCTCCTCTACTCTGGAGGTC
3' ss Score
-5.17
Exon sequences
Seq C1 exon
ATCCCTGCTATCTGAGTGGAGGACCACAGTAGGCCACTAGAGGAGGAGAATCAAGATGCCCCAGTTGACAGTTAGGTGACGCTCTGAAGCTCATCTGCCTCTTAAACCATCAG
Seq A exon
GTCTAG
Seq C2 exon
GTGGCTGTGCTGTAGACTCTGTTGCCCTGTGACGTGCTGGTGCGGGGAGTTCCATAGGGAGGACGCTCGATGTCCTGGAAGCCAGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001317-3-5,3-4,3-3,3-2-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGACGCTCTGAAGCTCATC
R:
AGCGTCCTCCCTATGGAACTC
Band lengths:
106-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]