RnoINT0168573 @ rn6
Intron Retention
Gene
ENSRNOG00000001317 | Zfp68
Description
zinc finger protein 68 [Source:RGD Symbol;Acc:1310463]
Coordinates
chr12:18155264-18155961:+
Coord C1 exon
chr12:18155264-18155376
Coord A exon
chr12:18155377-18155865
Coord C2 exon
chr12:18155866-18155961
Length
489 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CAGTCTCCTCTACTCTGGAGGTC
3' ss Score
-5.17
Exon sequences
Seq C1 exon
ATCCCTGCTATCTGAGTGGAGGACCACAGTAGGCCACTAGAGGAGGAGAATCAAGATGCCCCAGTTGACAGTTAGGTGACGCTCTGAAGCTCATCTGCCTCTTAAACCATCAG
Seq A exon
GTAGGTGCACCTACCAAAAAGAACCCATCTGATGCTAGCCTAAATTACTGACCAGCCCAATAATATTGTATTTAAAAAATTTTGAAGGGGCTTGTTATCTAGTGTAGATTATTATTACCCCTATGATAGATAGGATTCTAAAATTTAATGACACTTTGCTAATATTGGCAAAACAGTAGGTACTTTATACGTAGTGAGTTCCTCTAACTAAAAGATGAGTCGGATAGAAAAAATGTAGACATGTATACATAGGATTGGTGTTCAACTCACAGTACTGGTTAGGCTGGCTTCATTCATTCATGGGTTGGTGACTCTGCTGTTAACTTAGGGCCCCAAAGGCAGCCCCTCCTGTATAATTGAAGGCACTGGGTTGAGGAATCAGGCAGATGAACAATAGGGGGCAGGTTTTCCCAGTCTTGATAGAGCCTTTTACTCTGAAGCTCGCCATCTTGGGATGCGTCCCTAGGCTCAGTCTCCTCTACTCTGGAG
Seq C2 exon
GTCTAGGTGGCTGTGCTGTAGACTCTGTTGCCCTGTGACGTGCTGGTGCGGGGAGTTCCATAGGGAGGACGCTCGATGTCCTGGAAGCCAGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001317:ENSRNOT00000001784:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCTATCTGAGTGGAGGA
R:
CTTCCAGGACATCGAGCGTC
Band lengths:
198-687
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]