RnoALTA0045824-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000007064 | Zfp746
Description
zinc finger protein 746 [Source:RGD Symbol;Acc:1306209]
Coordinates
chr4:77725677-77727358:-
Coord C1 exon
chr4:77727233-77727358
Coord A exon
NA
Coord C2 exon
chr4:77725677-77725777
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
GTCCTACTCTTTCTCAGCAGATG
3' ss Score
8.76
Exon sequences
Seq C1 exon
GTGTCCATTCCAACTTTTCAACCACCATCCCACCCACTTCCTGGCAAGCAGACCTCCCTCCCCACCACCCCTCTTCAGCATGCTCAGATGGGACATTGAAGCTCAACACAGCAGCATCCACAGAAG
Seq A exon
NA
Seq C2 exon
ATGTAAAAATTGTTATCAAAACAGAAGTCCAAGAAGAGGAGGTGGTGGCTACACCTGTGCATCCCACCGACCTGGAGGCTCATGGGACTTTGTTTGCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007064-8-8,8-7-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.860 A=NA C2=0.563
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=7.0),PF0009621=zf-C2H2=WD(100=6.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGCATGCTCAGATGGGAC
R:
GTAGCCACCACCTCCTCTTCT
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]