RnoEX0101685 @ rn6
Exon Skipping
Gene
ENSRNOG00000007064 | Zfp746
Description
zinc finger protein 746 [Source:RGD Symbol;Acc:1306209]
Coordinates
chr4:77723183-77728153:-
Coord C1 exon
chr4:77727962-77728153
Coord A exon
chr4:77727233-77727358
Coord C2 exon
chr4:77723183-77725780
Length
126 bp
Sequences
Splice sites
3' ss Seq
GCGATTTCTCTTCCTTACAGGTG
3' ss Score
11.7
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GTTCTGGAGCACCAGTTCCTGCCCCTGACCTCCTGATGCAAATCAAGCAAGAGGGGGAGCTCCAACTACAGGAGCAGCAGGCTCTGGGTGTGGAAGCCTGGGCAGCTGGACAACCAGATATTGGGGAAGAGCCGTGGGGCCTCAGCCAGTTGGACTCTGGAGCAGGAGACATCTCCACAGATGCTACCTCTG
Seq A exon
GTGTCCATTCCAACTTTTCAACCACCATCCCACCCACTTCCTGGCAAGCAGACCTCCCTCCCCACCACCCCTCTTCAGCATGCTCAGATGGGACATTGAAGCTCAACACAGCAGCATCCACAGAAG
Seq C2 exon
CAGATGTAAAAATTGTTATCAAAACAGAAGTCCAAGAAGAGGAGGTGGTGGCTACACCTGTGCATCCCACCGACCTGGAGGCTCATGGGACTTTGTTTGCACCAGGCCAAGCCACAAGATTCTTCCCCAGCCCTGTCCAGGAAGGAGCCTGGGAGAGTCAAGGCAGTTCCTTCCCCAGCCAGGACCCAGTGCTGGGCCTGCGGGAGCCCACTCGGCCAGAGAGGGACATTGGTGAGCTCAGTCCTGCCATAGCACAGGAGGAGGCTCCTGCCGGGGATTGGCTCTTTGGAGGAGTCAGGTGGGGCTGGAATTTCCGGTGTAAACCTCCAGTGAGCCTGAACCCAAGGACGGTGCCCGAGGGGCTCCCTTTCTCATCTCCAGACAATGGAGAGGCCATCTTGGACCCCAGTCAGGCCCCAAGACCCTTCAATGATCCCTGCAAATACCCCGGCCGGACAAAAGGCTTTGGCCACAAACCGGGGCTGAAGAAGCACCCAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007064_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.954 A=0.860 C2=0.563
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009621=zf-C2H2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=7.0),PF0009621=zf-C2H2=WD(100=6.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGGGGGAGCTCCAACTAC
R:
CTTGGCCTGGTGCAAACAAAG
Band lengths:
255-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]