MmuEX0053598 @ mm10
Exon Skipping
Gene
ENSMUSG00000057691 | Zfp746
Description
zinc finger protein 746 [Source:MGI Symbol;Acc:MGI:1916478]
Coordinates
chr6:48061057-48067360:-
Coord C1 exon
chr6:48067169-48067360
Coord A exon
chr6:48066429-48066554
Coord C2 exon
chr6:48061057-48064949
Length
126 bp
Sequences
Splice sites
3' ss Seq
GCAATTTCTCTTCCTTACAGGTG
3' ss Score
11.28
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GCTCTGGAGCACCAGTTCCTGCCCCTGACCTCCTGATGCAAATCAAGCAAGAGGGGGAGCTGCAGCTGCAGGAGCAGCAGGCTCTGGGTGTGGAAGCCTGGGCAGCTGGACAGCCAGATATTGGGGAAGAGCCGTGGGGCCTCAGCCAGTTGGACTCTGGAGCAGGAGACATCTCCACAGATGCTACCTCTG
Seq A exon
GTGTCCATTCCAACTTTTCAACCACCATCCCACCCACTTCCTGGCAAGCAGATCTCCCTCCCCACCACCCCTCTTCAGCATGCTCAGATGGGACACTGAAGCTCAACACAGCAGCATCCACAGAAG
Seq C2 exon
ATGTAAAAATTGTTATCAAAACAGAAGTCCAGGAAGAGGAGGTGGTGGCCACACCTGTTCATCCCACGGACCTGGAGGCTCATGGGACTTTGTTTGCACCAGGCCAAGCCACAAGATTCTTCCCTAGCCCTGTCCAGGAAGGAGCCTGGGAAAGTCAAGGCAGTTCCTTCCCCAGCCAGGACCCAGTGCTAGGCCTGCGGGAGCCCACTCGGCCAGAGAGGGACATTGGTGAGCTCAGTCCTGCCATAGCACAGGAGGAGGCTCCTGCCGGGGATTGGCTCTTTGGCGGAGTCAGGTGGGGCTGGAATTTCCGGTGTAAACCTCCAGTGGGCCTGAACCCGAGGACGGTGCCCGAGGGGCTCCCTTTCTCATCTCCAGACAACGGAGAGGCCATCTTGGACCCCAGCCAGGCCCCAAGACCCTTCAATGATCCCTGCAAATACCCTGGCCGGACAAAAGGCTTCGGCCACAAACCGGGGCTGAAGAAGCACCCGGCGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057691_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.877 A=0.849 C2=0.616
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009621=zf-C2H2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=7.0),PF0009621=zf-C2H2=WD(100=6.2)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAATCAAGCAAGAGGGGGA
R:
CCTGGTGCAAACAAAGTCCCA
Band lengths:
258-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types