MmuINT0179812 @ mm10
Intron Retention
Gene
ENSMUSG00000057691 | Zfp746
Description
zinc finger protein 746 [Source:MGI Symbol;Acc:MGI:1916478]
Coordinates
chr6:48062395-48066554:-
Coord C1 exon
chr6:48066429-48066554
Coord A exon
chr6:48064953-48066428
Coord C2 exon
chr6:48062395-48064952
Length
1476 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
TACTCTCTGTCTTTTCTCAGCAG
3' ss Score
7.32
Exon sequences
Seq C1 exon
GTGTCCATTCCAACTTTTCAACCACCATCCCACCCACTTCCTGGCAAGCAGATCTCCCTCCCCACCACCCCTCTTCAGCATGCTCAGATGGGACACTGAAGCTCAACACAGCAGCATCCACAGAAG
Seq A exon
GTACAGGAGTGGCAGGAGAGGAGAGTGACTGCCTGAATGGGCACTCTGTTCTTACTGGTGACTGTCCCATGCTCTCAGCCAGCATGCACTTAGCTCACGGCTCTCTGTGCCTTCTGCTCTATCTCCTTCAGAACTCTCTGACTTAAACAGCCTTTCTTGAAAATACCCGTTTCTTACAGACAGTTCCTTGTTAAAATAAAATAAAATAAAAAATCCATATTTTTCCTCCAGGCCCTTGCGCCCGGGATGACAACTGTGAGACTAATTATTTATTAATAAATGTCTAGGCCACAAGATTTGGCTCATTCCCTGACTAGTTCGTAACTGATTTAACCCATTCAAACTGTTCTATGCCTTCCACATGGTTAGTTAACTCACCTCAGCTTCATGCATCCAAATCCAGGTCCAATCTCCCTTTATAATAACCTGAGTTCAGCTATATGGCTGGTTTACCTCCACGTCCTCTGAGTTCCGGTCGAATATCCCGCTTCCCTCTCTATTTCCCAGAATCCTCTCTCTTCCTGCCAGTGTCCCACCTCCTATTTCCTGCCTCACCTTATTGGCCATAGGCTTTTTTATTGACAGGTATTGGCTTAAAAGAGATTCTCCCTATAGTTCTTTCCTCAGTTAGCCAGTCTATTCAGATAAGCAGAAGTCTTAGAAGATAGGCCTTCCCCATCCCCCAGGCAACCTGTGGCTTCCAGGCACAGTTGCATACAAACAGAGCTAAAGCCACTTCTAGATACCAGTACTGCCAAAGACAGCAGAAGCCAGAGTTGGGAAGAACAACGTTCACATTCTTGTATTCGTGTTCTTTTGTTTGAAGGCCAGTATTCTGTTACCTTAATAAAAAATTTCTGTCATCTTCTTGCCACCCCCCACCTCAAAATATGCTAAAACACTGAGAGTCCTGTTATGGGGCCTTGAGGTTGAAATTCAATACATTTCTATAAAGTCAAACAGTTCTACTTGTTCGTTAACATTTTGGTCATCAGAATAACTGCAGTACTGTGTACCAGATGGTATGCCCAGGGACCTTTCCATGTGTCGTCCTGGCTAATCTTGCAGCCCCATGAAGTTGGGCATTCACAGTGAAGCTGTGGCTAAGAATGTGCCTGAAAGCTGTACAGAGTCCCAGACACCTCAGAGTGCAGGCCCTATTTTTAGTACACGACGACCATTCTCAAAATCTTTTTTAGAATAAATTTGTAATTTACTTTAATGGCCAAAGAAAGAAAAAACAGAATCTGGGGGCCAAATTTGAGGGCTACTTTTACTGTGAAGTCACCAGGCCAGATGAAGCTTTTGGCTAGCCTCACCCAGAGTGGGGTGCGCATTTTAGAACGGTAGTGAGGTCCCAATGTGGTGCTCCATAGGGCTGAGTAATTGCCGAGTTTCCAGATGAAGGTGTCTGACCCATTTTGTCCTTTAAAAGTGTCCAGAATGATCTCTGCCCTACTCTCTGTCTTTTCTCAG
Seq C2 exon
CAGATGTAAAAATTGTTATCAAAACAGAAGTCCAGGAAGAGGAGGTGGTGGCCACACCTGTTCATCCCACGGACCTGGAGGCTCATGGGACTTTGTTTGCACCAGGCCAAGCCACAAGATTCTTCCCTAGCCCTGTCCAGGAAGGAGCCTGGGAAAGTCAAGGCAGTTCCTTCCCCAGCCAGGACCCAGTGCTAGGCCTGCGGGAGCCCACTCGGCCAGAGAGGGACATTGGTGAGCTCAGTCCTGCCATAGCACAGGAGGAGGCTCCTGCCGGGGATTGGCTCTTTGGCGGAGTCAGGTGGGGCTGGAATTTCCGGTGTAAACCTCCAGTGGGCCTGAACCCGAGGACGGTGCCCGAGGGGCTCCCTTTCTCATCTCCAGACAACGGAGAGGCCATCTTGGACCCCAGCCAGGCCCCAAGACCCTTCAATGATCCCTGCAAATACCCTGGCCGGACAAAAGGCTTCGGCCACAAACCGGGGCTGAAGAAGCACCCGGCGGCACCACCCGGAGGCCGGCCCTTCACCTGTGCCACCTGCGGAAAGAGCTTCCAGCTGCAGGTGAGCCTGAGTGCCCACCAGCGCAGCTGCGGACTGTCCGATGGGGCGGCCACGGGGGCAGCTTCCACCACTACTGGAGGCGGAGGTGGTGGCAGCGGCGGAGGAGGAGGCAGCAGCGGAGGTGGGAGCAGTGCACGGGACAGCAGCGCTCTGAGGTGTGGGGAGTGTGGTCGCTGCTTCACACGCCCTGCACACCTCATCCGCCACCGCATGCTACACACTGGTGAGAGGCCCTTCCCCTGCACCGAGTGCGAGAAGCGCTTCACAGAGCGTTCCAAGCTCATCGACCACTACCGAACGCACACGGGCGTGCGGCCATTCACCTGCACAGTGTGTGGGAAGAGCTTCATCCGCAAGGACCACCTCCGCAAGCACCAGCGCAACCACCCTGCAGTGGCCAAGGCGCCCGCACACGGTCAGCCACTCCCACCACTGCCGGCTCCTCCCGACCCTTTCAAGAGCCCCGCAGCCAAAGGACCCATGGCCTCCACAGACCTTGTGACTGACTGGACTTGTGGCCTAAGTGTTCTGGGACCCAGTGATGGTGGTGGAGACCTGTAAGGACCCCAATCCTCCTGTGGCCCTTGCAGGCCACGAATGTACAGTCCTGAGTGCAGATAGCAGGATGGCCTGAAAGCTCAGAAGCAAAAAGGGAGACTTGGCAGAGAACCAAATTTCCATGTTGCTGAACTGATCACTGGAAAAGACTATCGATGCAGCCTCCACCTTAAAGTAGAATTCCAACTGTGAAACTCAACACCGTATAGGATCTTAAGTAATTTAATTACCCATTTTTTGTTTTTTCTCTTTAATTCTTGAGGAAAAAGCTGGAAAACAGTAGCAACAACCAGTTAGATTTTGAGGTGTGGCTTTCAGAGGTGTATGTTCACCGTGTCTTACCAGTGTTAGAAAGATGGTCAGTGGGAGAAGGGCACTCCCAGCCATGGACCACACAGCCCTATGGGAGGTTGAGTTCCAGGTCTGTCCAGGCATGTTGGGGCTTACACTCAGCAGTAAGAACCCTACTAGAAGCAGCCCTTACCTTCTGAAAAGACCCTTTAAGCCAAGGCCTGACTTTTTCCTGTTTTGAGCCATCTGTGGTACCTGTCCAAGGTGGTAACTCCACTATAGTAGTGACTCCTTGGCCTGGCTAAGAAGAATCATATGGAGCTGTAGTAGTGTTAGATCTGAAGTCACAGGAAGCCAGGGCCTCCCATCTTGGGCTATCTCCATTACCCACAGATGCTTCTGTTGGCTGCCCGTTGTGTAGTATGTTCATTTTCAAAATGGCTTCACTGGTTCCACCTCACATCTCATCCCACCATTAACCATGACTTTGGAAAGCAGGCAGACAGGCAGTTCTTCTTAGAGAATAGGAAATAAAGGGCTCAGAGGGGACACAGCCTCTCTCCATGAGTACTGTATTGTAGGAGCTGGGAAGAGCCGCAGCTGATAACCAGTTCTCCTGGAACAATGGTTTAGGGAAGGAAAGGTTTTGAGATCTTACCCTCTGAAAAGATTTGTGCCACACCCATGGATCAGGCCATCAAGTCACAGAACTCCTGCATCAGCAGCTCGAGCTGGACAGCCCCTGTGTGTGCTTATGCATCACTAGACATGCAGGAGGTAGTTGGATTGCCAGGTAACTGGGTAAATGGCTCTCAGGCCTGCCTGGAGTATCTTCACAGTGGAATTAGAGCTAGGTCCAAGTTTCTGTCATAACAGTGCTGTCCCCACCACACATAGCCATTCCCATTTTGTTAAAGCAGCCACTGGTCTCTTGCCCAAATGGGTAATGACTCCCTGAAGAGGGCAGAGACCATGGCACCCATTCAGCTCCTTCTGCATACTTTTATTAGAAATAGACTAGTTAAGAAAATTGTTTCTATGTACTGTATATTTTGTACCTGTTTACACTTCTAATATTGATATAACTGATATTTTGAAAAACAAATGAACAGAAGACATCCTGTTAAAATAAAATCTAACCAGCACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057691:ENSMUST00000073124:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.849 A=NA C2=0.580
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=7.0),PF0009621=zf-C2H2=WD(100=6.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCAACCACCATCCCACCC
R:
ACTGAGCTCACCAATGTCCCT
Band lengths:
354-1830
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types