RnoINT0168632 @ rn6
Intron Retention
Gene
ENSRNOG00000007064 | Zfp746
Description
zinc finger protein 746 [Source:RGD Symbol;Acc:1306209]
Coordinates
chr4:77723183-77727358:-
Coord C1 exon
chr4:77727233-77727358
Coord A exon
chr4:77725781-77727232
Coord C2 exon
chr4:77723183-77725780
Length
1452 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
TCTGTCCTACTCTTTCTCAGCAG
3' ss Score
7.07
Exon sequences
Seq C1 exon
GTGTCCATTCCAACTTTTCAACCACCATCCCACCCACTTCCTGGCAAGCAGACCTCCCTCCCCACCACCCCTCTTCAGCATGCTCAGATGGGACATTGAAGCTCAACACAGCAGCATCCACAGAAG
Seq A exon
GTACAGGAGTGGCAGGACAGGAGAGTGAATGCCGGATGGATGGGGACTCTGTTCTTACTGGTGAATTGTCCCATCCTCTCGGCCAGCATGCACTTCCCTTACGGCTCTCTGTGCCTTCTACTCTCTATCTCCTTCAGAACTCTCTGAACAGCCTTTCTTGAGGATACCCATGTTTCTTACAGACAGTTCCTTGTTAAAAAAAAAAAAAAAAATCATTTTTCCTCCCAGCCTTGCTCCTGGAATGACAACTGTGAGGCTAATTATTTATTAATAAATGTCTAGCCACAAGTTTTGGCTCATTCCCCGACTAGCTTGTAACTGATTTAACCCATTCAAACTGTTCTATGCCTTCCACATGGTTAGTTTCCTCTCCTAGCTTCCTGGGTCCAAATCCAGGGGGAATCTCCCTTTATTCCAACCTGGGTTCAGCTACATGGCTGGTTTACTCCATCTCCTCAGCGTTCCAGCCGGAATGACCTGCACCCCTCTCTATTTCCTAGAATCCTCTCTCTTCCTGCCAGTGCCCCACCTCCTATTTCCTCCCTCAGCTCATTGGCCATAGGCTTTATTATTGACAGGTGTTGCTTAAAAGAGATTCTCCCTGTAATTCTTTCCTGGTAGAGTTGGCCAATCTATTCAAATAAGCTGATTTCTAGAGGATAAGCTTTCCCCATCCCACCTCCCAACCCCCCCCCCCCAGGCAACCTGTGGCTTCCAGGCCCAGATGCAGACAGACAGAGCTATAACCACTTCCTAGATATCCATAGACAAAGACAGCAGACGCCAGAGTTGGGAAGAGCAACATTCACATTCTTTTGTTTGAAAGCTAATTACCTGTTACCTTAATAAAAATTTCTGTCATCTTTTACCACTCCCACCACCAAATATACTAAAACACCAAGAACGCTGTTATCAGGTCTTGAGGTTGAGATTCATACATTTATATAAAGTCAAACAGCTCCACTTGTTCGATCAGATAGCTGCATTTTCTGTGTACCAGACGGTGTGCCTGGGACCTTTCCATGTGTTATCCTGGCTAATCTTGCAGCCCTATGAAATAAAGCTGTGACTAAGAATGTGCCTGACAGCTATACAGAGTCCCAGACACATCAGAGGGCAAGCCTGTGCTTCTGCCTTATTTTTAGTACATGATCACCACACTCAAAATCTTTTTTTAGAATAAATTCGTAATTTACTTTAATAGCTAAAGAAAGAGAAAACAGAATCTGAGGAGCAAATTTGAGGGCTACTTTTACTGTGAAGAAGTCACCAGGCCAGGTGAAGCTTTTGGTTAGCCTCACCCAGGACGGGATGCTCATTTGACTTATGGTATTGAGGTCCCAATGTGGTGCTCCGTGGGGCTGAGTAATTGCTGAGTTTCCAGATGGAGGTGTCTGACCCATTTTGTCCTTTAAAAATGCCCAGAATGATCTCTGTCCTACTCTTTCTCAG
Seq C2 exon
CAGATGTAAAAATTGTTATCAAAACAGAAGTCCAAGAAGAGGAGGTGGTGGCTACACCTGTGCATCCCACCGACCTGGAGGCTCATGGGACTTTGTTTGCACCAGGCCAAGCCACAAGATTCTTCCCCAGCCCTGTCCAGGAAGGAGCCTGGGAGAGTCAAGGCAGTTCCTTCCCCAGCCAGGACCCAGTGCTGGGCCTGCGGGAGCCCACTCGGCCAGAGAGGGACATTGGTGAGCTCAGTCCTGCCATAGCACAGGAGGAGGCTCCTGCCGGGGATTGGCTCTTTGGAGGAGTCAGGTGGGGCTGGAATTTCCGGTGTAAACCTCCAGTGAGCCTGAACCCAAGGACGGTGCCCGAGGGGCTCCCTTTCTCATCTCCAGACAATGGAGAGGCCATCTTGGACCCCAGTCAGGCCCCAAGACCCTTCAATGATCCCTGCAAATACCCCGGCCGGACAAAAGGCTTTGGCCACAAACCGGGGCTGAAGAAGCACCCAGCAGCACCACCCGGAGGCCGGCCCTTCACCTGTGCCACCTGCGGAAAGAGCTTCCAGCTGCAGGTGAGCCTCAGTGCTCACCAGCGCAGCTGCGGACTGTCGGACGGGGCGGGTACCGGGGCAGCTTCCACCGCTACAGGAGGCGGAGGTGGGGGCGGGGGCGGAGGCAGCAGCGCAGGTGGAAGCAGTGCACGGGACAGCAGCGCTCTGAGGTGTGGGGAGTGTGGCCGCTGCTTCACACGCCCTGCACACCTCATCCGCCACCGCATGCTACACACTGGTGAGAGGCCCTTCCCCTGCACCGAGTGCGAGAAGCGCTTCACAGAGCGTTCCAAGCTCATCGACCACTACCGAACGCACACAGGCGTGCGGCCCTTCACCTGCACAGTGTGTGGAAAGAGCTTCATCCGCAAGGACCACCTCCGCAAGCACCAGCGCAACCACCCGGCAGTGGCTAAGGCACCTGCACACGGTCAGCCGCTCCCACCACTGCCGGCTCCTCCTGATCCCTTCAAGAGCCCCGCAGCCAAAGGACCCATGGCATCCACAGACCTTGTGACTGACTGGACTTGTGGCCTAAGTGTCCTGGGACCCAATGATGGTGGTGGAGACCTGTGAGGGCCCCAACCCTCCTGTGGCCCCTGCAAGCCACGAATGTACAGCCCTGAATGCAGATAGCAGGATGGCCTGAAAGCTCAGAAGCAGAATGGGGGACATGGCAGAAAACCAAATCCCATGTTGCTGAACTGATCACTGGAAAGAAGGACTATCAACGCAGCCTCCGCCTGAACGTAGAGTTCCGACTGTGAAACTGAACACCTTAATGGATCTTAAGTAATTTAATTACCCTTTTTTTTTTTTTTTTGTTTTGTTTTTTCTCTAATTCTTGAGGGAAAAGCTGGAAAAATGGTAGCAACGACCAGTTTTTGAGGTGTGGCTTTGAGAGGTGTGTGCTCACCTTGTCTTAGCAGTGTTGGAAAGATGGTCAGTGGGAGAAGCAGGCAAGGGCACTCCCAGCCGTGGACCACACAGTCCTGGGCAGGTTGAGTTCCAGTCCTGTCCAGGCATGCTGGGGCCTAGACTGACAGGTTCCACTCAGCAGTAGGGACCCTACTAGAAGCAGCCCTTCTCTTCTGAAAAGACCCTTTAAGCCAAGGCCTGACTTTTCCTGTTTTGAGCCATCTGTGATACCTGTCCAAGGTGGTAACATCCACTGTAGTAGTGACTTCTGGGCCAGGCTAAGAAGAATCATATGGAGCTGTAGTAGTGTTTGATCTCAAGGGTGTTTTGCCTTCGAACATGAAGTCACAGAAAGCCAGGGCCACCCATCTTGGGCTACCTCCATTACCCATAGATGCTTCAGTTGGCTGCCCATTGTGTAGTATGTTCATTTTCAAAATGGACTCACCGGTTCCACCTCACATGTCATTCCACCATTAACCATGACTTTGCAAAGCAGGTAGACAGGCAGTTCTTTCTACAGAAGAGGAATAAAGGGCTCAGAGGGGACAGAGCCTCTCCATGAGTACTGTGTGTTCTAGGAGCTAAGGTGAGCAGCAGTGATACTGGGTCCTAGAATAGTGGAAAGGTTTTGAGATCTTGCCCTCTTAAAAGATTTGTCCCACACGCATGGATCAGATAGATCAAGACAGAACTCCTGCCTCAGCAGCTCGAGCTGGACAGTCCCCGGTGTGTGTGCTTGCACATCATAGACATGCAGGAGGCAGTTGGATTGCCAGCTAACTGGGTAAATGGCTCTCAGGCCTGCCTGCCTGGAGTATCTTCACAGTGGAATTAGAGCTAGGTCCAAGTTTCTGTCTTAACAGTGCTGTCCCCATCACACATAGCCATTCCCATTTTGTTAAAGCAGCCACTGGTCCTCTTGCCCAAATGGGTAATGATTCCCTGAAGAGGGCAGAGACCATGGTGCCCATTCAGCTCCTTCCTGCATACTTTTATTAGAAATAGACTAGTTAAGAAAATTGTTTCTATGTACTGTATATTTTGTACCTGTTTACACTTCTAATATTGATATAACTGATATTTTGAAAAACAGATGAACAGAAAACATCCTGTTAAAATAAAATCTAACCAGCACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007064:ENSRNOT00000009247:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.860 A=NA C2=0.563
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=7.0),PF0009621=zf-C2H2=WD(100=6.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAAGCTCAACACAGCAGCA
R:
GAAATTCCAGCCCCACCTGAC
Band lengths:
345-1797
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]