HsaINT1047664 @ hg38
Intron Retention
Gene
ENSG00000181220 | ZNF746
Description
zinc finger protein 746 [Source:HGNC Symbol;Acc:HGNC:21948]
Coordinates
chr7:149472794-149477047:-
Coord C1 exon
chr7:149476922-149477047
Coord A exon
chr7:149475481-149476921
Coord C2 exon
chr7:149472794-149475480
Length
1441 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
CTTTCTGTCTTTCTCAGCAGATG
3' ss Score
11.39
Exon sequences
Seq C1 exon
GTGTCCATTCCAACTTTTCCACCACCATCCCGCCCACCTCCTGGCAAACGGATCTCCCTCCCCACCATCCCTCTTCAGCATGCTCGGACGGGACCCTGAAGCTCAACACAGCAGCCTCCACGGAAG
Seq A exon
GTACAGGTGGCGAGAGGAGGAAGGGAAGGGCCATGCTTGCCTGTGGGGAGTACCTCGGTCCAGGCATCCCATTTTCACTGGTGAACTGCTCTGACCTTCCAGCCAACAGACATTAGGGTGTCTGCACTCTTATGACCCTTTGCACATTCTGTTATTTATCTCCTTGCCAAATCATAGGTGTCAGCAGCCCTTCTTGAGGACATCCATGTTTCAGTCTGTTGCTTTTTCATATGGTGTTAAGTGGTCTATTCTAACAAGCCTATCTCTTGAAGGATATACCTCCTCCCCAGCTTAGGAAACTGTGGCTTCTCTCTGGCATGGAGGAAAACAAAATTGAACTGAAACCACTTCTTAGATATTGGTACTACCAAAGACAGGTGTCTGAAGGCCGATTTCAGAAGAACCACCACCAAATTTATCTGTTAGCTTTCTGTTTACTTCTGTTTTGAAGACCAGTCACCTGTTACTATAATAACGTCATATTTTAGCACCCAAAAAACGTGCTAATAGCCAAGATCCCTGATGTGAAACCTCAGAATGTGAAGTTGAAGTACGCTTATATAAAATCAAACACATTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGCGGAGTCTCACTCTGTCCCCCAGGCTTGGAGTGCAGTGGGGCGATCTCTGCTCACTGCACGCTCCGCCTTCCGGGTTCACGCCATTCTCCTGCTCAGCCTCCCAAGTAGCTGGGACTACAGGTGCCCGCCACCACGCCCAGCTAATTTTTCGTATTTTTAGTAGAGACGGCGTTTCACCATGTTAGCCAGGATGGTCTCAATCTCCTGACCTCATGATCCCCCCGCCTTGGCCTCCCAAAGTGCTGGGATTATAGGCGTGAGCCACCGCGCCTGGCCAAACACATTCTTATTCACTAATATTTTTATCATTAGCTGGTGGGTCCATTTATTGAATGCTGCTGCATGTCAAATAGCTCACTAAGGTGCTTTCAGACATGTTGTCTGGTTTAATCCTCACACCTGTGAAGTGGGCATTCACAGATGAGCTGTGGGTTAGAAACTGCCTGCAGCCCACAGCTGGTGTGTGGCCGAGCTGTCTGAACCCCCATTCCCTGCACTGTGGTGGGGCACAGTGCCTGCAGCAGTTCGAATTCCTTTCTGAGGATCAATTCATGCTTAGCCTTAACAGCCAAACTGAAAAATGGAGCCTGGGGAGCAGATATGGTGGCTTGTCCTGTGGTGAAGGTGCCAGAACACTGGTGTCCTCGAGGGGGAGGCAGCCTCACAGCCACCAGGCTGCTCTGCTGAGCTGCCCTCTGGGCTCAGCCACGAGGGCCTGGGTGGAGTTTGTCTGGCCAGGCAGCTGCTGAGCAGGTGATGGTGGCAGATCGTGGCTCGCTCAGCAGTTAAGGGACAGGTCAGTATCTGTCTTTCTGTCTTTCTCAGCAG
Seq C2 exon
ATGTAAAAATTGTAATAAAAACAGAAGTCCAGGAAGAGGAGGTGGTGGCCACACCCGTACATCCTACTGACCTAGAGGCTCACGGGACCCTGTTTGGACCAGGCCAAGCCACACGGTTCTTCCCTAGTCCTGCCCAGGAAGGAGCCTGGGAAAGCCAGGGCAGCTCCTTCCCCAGCCAGGACCCTGTGCTGGGGCTGCGAGAGCCCGCCCGGCCTGAGAGGGACATGGGTGAGCTCAGTCCTGCTGTGGCCCAGGAGGAGACCCCTCCTGGGGACTGGCTCTTCGGAGGGGTCCGGTGGGGCTGGAATTTCCGGTGTAAACCGCCAGTGGGCCTGAACCCGAGGACGGGGCCCGAGGGGCTTCCTTACTCCTCCCCGGACAACGGAGAGGCCATCTTGGACCCCAGCCAGGCCCCAAGGCCATTCAACGAACCCTGTAAATACCCTGGCCGGACCAAAGGCTTTGGCCACAAGCCAGGGCTGAAGAAGCACCCCGCGGCGCCCCCCGGGGGCCGGCCCTTCACCTGCGCCACGTGTGGGAAGAGCTTCCAGCTGCAAGTCAGCCTGAGCGCGCACCAGCGCAGCTGTGGGGCGCCCGACGGGTCGGGCCCGGGCACAGGCGGTGGCGGCAGCGGCAGTGGCGGCGGCGGTGGCGGCAGCGGTGGGGGCAGCGCACGGGATGGCAGCGCCCTTCGGTGTGGGGAGTGCGGCCGTTGCTTCACGCGCCCCGCGCACCTCATCCGCCATCGCATGCTGCACACCGGCGAGCGGCCCTTCCCCTGCACCGAGTGTGAGAAGCGCTTCACCGAACGCTCCAAGCTCATCGACCACTACCGAACGCACACGGGCGTGCGGCCCTTCACCTGCACCGTCTGCGGCAAAAGCTTCATCCGCAAGGACCACCTCCGCAAGCACCAGCGCAACCATGCAGCGGGCGCCAAGACCCCGGCCCGAGGCCAGCCACTCCCGACGCCGCCCGCACCTCCTGATCCCTTCAAGAGCCCCGCCTCCAAAGGACCTTTGGCCTCCACAGACCTTGTGACCGACTGGACTTGTGGCCTCAGCGTCCTGGGACCCACCGATGGCGGGGACATGTGAGCGCCTCCAGCCCCATAGCCCCTGCCGGCCGCACGTGTAAAAAGCCCCGTGTGCAGGCAGCAGGGCGGCGTGGAAGCTTCAGGCAGACGCGGGACGGGGAGAACCAAATGTCCAAGTTGCTGAACTGATGATCACTGGAGAAAGAGAAACTATCCACCAGGACAGCTGCCACCTCTAAACCAAGTAGAATTCTCTGTGAAATGGGAGCGCCGTAGAATTTTAAGTAATTTAATTGCAAACCTGTTTTGTTTTTTGTTTTTTGTTTTTTTTTAATTCTTGAGGAAAAAGCTGGAAAATAGTAATAGGGCTATTTAAATTTTGTAGGTACTTTTGGTTTTCAGGGCGTGCATTTCTGTCACTATCTCACTGAGTCTGATAGTGTGTTGGAAGGTTGGCCAGTTGGGGACCCCTGGCCCACTGACTCCTGGGGATGGGGTCCTGTGTGTGCCCCTGCTCTGCCCAGTTGGGCTGAGTGGGCCTAGCGCACCAAGCCCCTGGGCAGTGAGGGCCATTGGGTCCCTTGGAGCACACCTCAGTGCAGCAGGAAGGACCCCTCCGGGAGTAGCGGTTGCATTTCCCAGCTTGCCTCTCCTGAAAAGGCCCCCCAAAAGTGCTGGCCCCAACTTTTCTCTATTTTGGGCCATCTGTGGTACCCGTCCCAAGGGCACTTGGTGGTGTCCCCTAGTGTGTGACTCCCTGGCCTCATAAGGACGAGTTGTCTGAAATCCCAGCGTTAGGTCTGGGGAGATGGAGAAGCTGAAACTGGGGAGCTGCACCACAAACGTCTAGCTCTCAGCAGAGCTGGGAGCAAAGCCTGGCCGCCCACCCCAACCTGGGGCTGCCTCCCACTCCGTGAGATGCTTCTGTCTCCTGTTCACTTTGTGTGGTAGTTTCTTATTTTCAAAATGCATCTCATTTGATCATTACTGTGACCTTGGGAAGCAGCAGGACAGGGATTTCTTTTTAGAGGTGCAAACTGCTCAGAGGGGACACACCTCAGCCTCTCACTGTGGGTACACGTGGCGTGCCATGAGTGGGGAAGAGCAACAGGCGAGATGCCTCATTCTACTGGAACATCACTGTGGGTGAACAGAGATTTCCAGGTTTTCCCTCTTAAAATATTTGTCCCACACCGACAAGAGTCCAGTCACCAGGCCTCAAAGGAACTTCTGCTTGTAGCAGCCGCCTCCCCTGTGCCCCAGCCTCCTTAATGTGTGCACTCTCAGAGGGCACAGCTCGCGAGGCTGGGTTTGGGGGCCAAGTGGCTTGTTCATTCCAGCATCTAACATCATAAAGGTGGGCCCAGATTTCTTGATTCGACCACAGTGCTGTTCCTACCACACAAATATCCATTCCTGTTTTGTTGAAGCAGCCACTGGTCCTCTTGTTTCCCCTGCAGACGGAGGGACCTGGCAGTGCCCATTCATTCAGCCCCCTCATGCATACTTTTATTAGGCGATAGACTAGTTAAGAAAATTGTTTCTATGTACTGTATATTTTGTACCTGTTTACACTTCTAATATTGATATAACTGATATTTTGAAAAATAAGAGAAAACATCCTGTTAAAATAAAACCTAACCAGCACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181220:ENST00000340622:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.860 A=NA C2=0.641
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=7.1),PF0009621=zf-C2H2=WD(100=6.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCCTGAAGCTCAACACAG
R:
TTACACCGGAAATTCCAGCCC
Band lengths:
355-1796
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains