BtaINT0166036 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031106 | ZNF746
Description
zinc finger protein 746 [Source:HGNC Symbol;Acc:HGNC:21948]
Coordinates
chr4:113292527-113295008:-
Coord C1 exon
chr4:113294993-113295008
Coord A exon
chr4:113293582-113294992
Coord C2 exon
chr4:113292527-113293581
Length
1411 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
GTCTTTTCTGTCTTTCTCAGCAG
3' ss Score
9.3
Exon sequences
Seq C1 exon
GCCGCCTCCACAGAAG
Seq A exon
GTACGGGGTATGGCGGGAGGACTGGAAGAGGGAGGAAAGGAAGTGCTCATGGGGACCGGAAGTGCTCGCGTCTGCTTCTGAGGCACCAGACCCGCCAGCCGGGAGGCATTTAGGGGCCAGTGATGCGAGAACGCTGTGCAGTCTGGCCTTCTCTCCTTCCACATTGTTAGACTTGAACAGCCTTTCTTGAGAATGTCCATGTTTCCCACAGTTCCTTTCTTGTGTTATTAACCAGTCAGTCCTGACAGGCTGATCCCGTGAGAGAATATATACCTCTTGCCCAGACTCAGCAATCCTGGCCCCTCTCTGACCTGGAAAAGCCAAACCCAACCGGAACCAATTCTTAGGTATTAGCACTACCAAAGACAGAGGTCCACCAGCTCAAATTGGAAAGAACTGCCATCAGTTCAGTTCAGTCGCTCAGTCGTTTACAACTCTTTGCAACCCCATGGACTGCAGCACGCCAGGCTTCCCTGTCCCTCACCAACTCCCGGAGCTTACTCAAACTCATATCCATCCAGTCGGTGATGCCATCCAACCCTCTCATCCTCTGTCGTCCCCTTCTCCTCTTGCCTCCAATCCTTCCCAGCATCAGGGTCTTTTCAAATGAGTCTTTTCAAAAGAACTGCCATATTTATGTATTAATTTTCTGTTTTGAAAAACAATTCGCTGTTACTTCAATAATTTCTGTCATATTTTAACACCCCCAAATTGTGCTAAAAGCCTAGATCTCTGATATAAAACTTGAAAGTGTGAAATTCAAGTACATTTAAGTAAAATCAAACATTACTATTTCATGAGTATTTTTATCATTAAATATATCATTAAATATATATCATTAAATGCAGCTAGCTGGCTGCATTTACTGAATGCTTGCTGCATGCAAAAACAGCATGCTCAGTGCTTTCACGTGTGCTGCCTGGTTTAATCTTCATGCAACCCTGTGGAAAAGGGTATTCACAGAGGAACTTGCCTGAAGTTGCAGCTGATCTGTGGGGAGCCAGGGTCCAGTCTCAGATGTGCCTGAGCCCAGCTCTGTGCATTGCCACCAGTGGTCTGAGTTCCTTCCTTGGAATAGCTTCATGATTAGCCTTACCAGCCAAAGTGAAAATGGGAAGTGATGGGGAGATGCAATGGTTCCTTACCTGTGGTGAAGGCTCTAGAACAAGGTGAGCAGATATGATGGTTGCTTTACCTGTAGAGAAAGTTCTGGAACACGATGTCCTCACCCACAGTTTGAGGCAGTTGCCTGACCACCTTGGGCACCTCTGCTGAACTAGATCCTGAGCCTTGGAGACTAGGGCTCAGAGTGGCCTTGGTGGGGCTGAATATCCAGAATAAAGTATCAGATCTTCCCTTTGTAAGCAGGAAGGGGGACAGAATGATACCTGGTCTTTTCTGTCTTTCTCAG
Seq C2 exon
CAGATGTAAAAATTGTGATAAAAACAGAAGTCCAAGAAGAAGAAGTGGTGGCCACACCAGTGCACCCTACTGACCTAGAAGCCCACGGGACACTGTTTGGACCAGGCCAGGCCACAAGGTTCTTCCCCAGTCCTGTCCAGGAAGGAGCCTGGGAGAGCCAGGGCAGCTCGTTCCCCAGCCAGGACCCCGTGCTGGGGCTGAGAGAGCCCGCCCGGCCCGAGCGTGACCTGGGGGATCCCACCCCCACAGTGCCCCAGGACGAGACCTCTCCAGGGGACTGGCTCTTCGGGGGGGTCCGGTGGGGCTGGAATTTCAGGTGTAAGCCTCCTGCGGGCCTCAACCCGAGGACTGGGCCCGAGGGGCTGCCCTTCTCCTCCTCCGACAACGGAGAGGCTGTGCTGGACCCCGGCCAGGCCCCGAGACCCTTCAACGACCCCTGTAAATACCCCGGCCGGACCAAAGGCTTCGGCCACAAGCCGGGTCTGAAGAAGCACCCGGCAGCCCCCCCGGGGGGGCGGCCGTTCACATGTGCCACGTGCGGGAAGAGCTTCCAGCTGCAGGTCAGCCTGAGCGCACACCAGCGCAGCTGTGGGGGCCAGCCCGATGGGGTGCCCGGGGCGGCGGGCAGCGCACGGGACGGCAGCGGCCTGCGGTGTGGCGAGTGCGGCCGCTGCTTCACGCGGCCGGCCCACCTCATCCGGCACCGCATGCTGCACACAGGCGAGCGGCCCTTCCCCTGCACGGAGTGCGAGAAGCGCTTCACTGAGCGCTCCAAGCTCATCGACCACTACCGCACGCACACGGGCGTGCGGCCCTTCACCTGCACCGTGTGCGGCAAGAGCTTCATCCGCAAGGACCACCTCCGCAAGCACCAGCGTAACCACGCGGCGGGCGCCAAGCCGGCCCGGGGACAGCCCCTGCCGCCGCTGCCCGCCGTGCCCCCCGACCCCTTCAAGAGCCCCGCCGCCAAAGGACCCTTGGCCCCCACGGACCTCGTGACCGACTGGACTTGTGGCCTGAGTGTCCTGGGACCCACCGACGGTGGAGACCTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031106:ENSBTAT00000018668:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.595
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=7.4),PF0009621=zf-C2H2=WD(100=6.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]