HsaEX6011160 @ hg38
Exon Skipping
Gene
ENSG00000181220 | ZNF746
Description
zinc finger protein 746 [Source:HGNC Symbol;Acc:HGNC:21948]
Coordinates
chr7:149472796-149477755:-
Coord C1 exon
chr7:149477564-149477755
Coord A exon
chr7:149476922-149477047
Coord C2 exon
chr7:149472796-149475483
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTGCTCTCCCCTTACCGCAGGTG
3' ss Score
10.41
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GCTCGGGGCCCCCAGTTCCCGCCCCAGACCTCTTGATGCAGATCAAGCAGGAGGGTGAGCTCCAGCTCCAGGAGCAGCAGGCCCTGGGCGTGGAGGCGTGGGCAGCCGGGCAGCCAGATATTGGGGAGGAGCCCTGGGGCCTCAGCCAGCTGGATTCCGGAGCAGGAGACATCTCCACGGATGCCACCTCTG
Seq A exon
GTGTCCATTCCAACTTTTCCACCACCATCCCGCCCACCTCCTGGCAAACGGATCTCCCTCCCCACCATCCCTCTTCAGCATGCTCGGACGGGACCCTGAAGCTCAACACAGCAGCCTCCACGGAAG
Seq C2 exon
CAGATGTAAAAATTGTAATAAAAACAGAAGTCCAGGAAGAGGAGGTGGTGGCCACACCCGTACATCCTACTGACCTAGAGGCTCACGGGACCCTGTTTGGACCAGGCCAAGCCACACGGTTCTTCCCTAGTCCTGCCCAGGAAGGAGCCTGGGAAAGCCAGGGCAGCTCCTTCCCCAGCCAGGACCCTGTGCTGGGGCTGCGAGAGCCCGCCCGGCCTGAGAGGGACATGGGTGAGCTCAGTCCTGCTGTGGCCCAGGAGGAGACCCCTCCTGGGGACTGGCTCTTCGGAGGGGTCCGGTGGGGCTGGAATTTCCGGTGTAAACCGCCAGTGGGCCTGAACCCGAGGACGGGGCCCGAGGGGCTTCCTTACTCCTCCCCGGACAACGGAGAGGCCATCTTGGACCCCAGCCAGGCCCCAAGGCCATTCAACGAACCCTGTAAATACCCTGGCCGGACCAAAGGCTTTGGCCACAAGCCAGGGCTGAAGAAGCACCCCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181220-'19-19,'19-17,20-19=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.985 A=0.860 C2=0.637
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009621=zf-C2H2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=7.1),PF0009621=zf-C2H2=WD(100=6.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAGACCTCTTGATGCAGA
R:
AGTAGGATGTACGGGTGTGGC
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains