HsaEX6011160 @ hg19
Exon Skipping
Gene
ENSG00000181220 | ZNF746
Description
zinc finger protein 746 [Source:HGNC Symbol;Acc:21948]
Coordinates
chr7:149169885-149174846:-
Coord C1 exon
chr7:149174655-149174846
Coord A exon
chr7:149174013-149174138
Coord C2 exon
chr7:149169885-149172571
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTGCTCTCCCCTTACCGCAGGTG
3' ss Score
10.41
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GCTCGGGGCCCCCAGTTCCCGCCCCAGACCTCTTGATGCAGATCAAGCAGGAGGGTGAGCTCCAGCTCCAGGAGCAGCAGGCCCTGGGCGTGGAGGCGTGGGCAGCCGGGCAGCCAGATATTGGGGAGGAGCCCTGGGGCCTCAGCCAGCTGGATTCCGGAGCAGGAGACATCTCCACGGATGCCACCTCTG
Seq A exon
GTGTCCATTCCAACTTTTCCACCACCATCCCGCCCACCTCCTGGCAAACGGATCTCCCTCCCCACCATCCCTCTTCAGCATGCTCGGACGGGACCCTGAAGCTCAACACAGCAGCCTCCACGGAAG
Seq C2 exon
ATGTAAAAATTGTAATAAAAACAGAAGTCCAGGAAGAGGAGGTGGTGGCCACACCCGTACATCCTACTGACCTAGAGGCTCACGGGACCCTGTTTGGACCAGGCCAAGCCACACGGTTCTTCCCTAGTCCTGCCCAGGAAGGAGCCTGGGAAAGCCAGGGCAGCTCCTTCCCCAGCCAGGACCCTGTGCTGGGGCTGCGAGAGCCCGCCCGGCCTGAGAGGGACATGGGTGAGCTCAGTCCTGCTGTGGCCCAGGAGGAGACCCCTCCTGGGGACTGGCTCTTCGGAGGGGTCCGGTGGGGCTGGAATTTCCGGTGTAAACCGCCAGTGGGCCTGAACCCGAGGACGGGGCCCGAGGGGCTTCCTTACTCCTCCCCGGACAACGGAGAGGCCATCTTGGACCCCAGCCAGGCCCCAAGGCCATTCAACGAACCCTGTAAATACCCTGGCCGGACCAAAGGCTTTGGCCACAAGCCAGGGCTGAAGAAGCACCCCGCGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181220-'6-10,'6-8,7-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.985 A=0.860 C2=0.641
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009621=zf-C2H2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=7.1),PF0009621=zf-C2H2=WD(100=6.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCAGATCAAGCAGGAGGG
R:
GTCCCGTGAGCCTCTAGGTC
Band lengths:
246-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)