RnoALTA0045886-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000011627 | Zfr
Description
zinc finger RNA binding protein [Source:RGD Symbol;Acc:1311890]
Coordinates
chr2:62208274-62208594:+
Coord C1 exon
chr2:62208274-62208385
Coord A exon
NA
Coord C2 exon
chr2:62208501-62208594
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TTTACAATGATTGTAGGCAGCCC
3' ss Score
-2.36
Exon sequences
Seq C1 exon
GCTATGGAGTTACTGGTAGAGAAAGCAATTAGCAGTGCTTCTAGTCCTCAAAGCCCTGGAGATGCCCTGAGAAGAGTATTTGAGTGCATTTCTTCAGGGATTATTCTCAAAG
Seq A exon
NA
Seq C2 exon
CCCTGGACTTCTGGATCCTTGTGAAAAGGATCCCTTTGATACTTTGGCAACAATGACTGACCAACAGCGTGAAGACATTACATCCAGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011627-38-39,38-38-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=NA C2=0.277
Domain overlap (PFAM):
C1:
PF075289=DZF=PU(39.1=97.3)
A:
NA
C2:
PF075289=DZF=FE(12.4=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCTCAAAGCCCTGGAGAT
R:
ACAAGGATCCAGAAGTCCAGGG
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]